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Population evolution of seagrasses returning to the ocean

Seagrasses are higher flowering plants that live entirely in marine environments, with the greatest habitat variation occurring from land to sea. Genetic structure or population differentiation history is a hot topic in evolutionary biology, which is of great significance for understanding speciatio...

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Detalles Bibliográficos
Autores principales: Yan, Wenjie, Wang, Zhaohua, Zhou, Bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559988/
https://www.ncbi.nlm.nih.gov/pubmed/37809433
http://dx.doi.org/10.1016/j.heliyon.2023.e20231
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author Yan, Wenjie
Wang, Zhaohua
Zhou, Bin
author_facet Yan, Wenjie
Wang, Zhaohua
Zhou, Bin
author_sort Yan, Wenjie
collection PubMed
description Seagrasses are higher flowering plants that live entirely in marine environments, with the greatest habitat variation occurring from land to sea. Genetic structure or population differentiation history is a hot topic in evolutionary biology, which is of great significance for understanding speciation. Genetic information is obtained from geographically distributed subpopulations, different subspecies, or strains of the same species using next-generation sequencing techniques. Genetic variation is identified by comparison with reference genomes. Genetic diversity is explored using population structure, principal component analysis (PCA), and phylogenetic relationships. Patterns of population genetic differentiation are elucidated by combining the isolation by distance (IBD) model, linkage disequilibrium levels, and genetic statistical analysis. Demographic history is simulated using effective population size, divergence time, and site frequency spectrum (SFS). Through various population genetic analyses, the genetic structure and historical population dynamics of seagrass can be clarified, and their evolutionary processes can be further explored at the molecular level to understand how evolutionary processes contributed to the formation of early ecological species and provide data support for seagrass conservation.
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spelling pubmed-105599882023-10-08 Population evolution of seagrasses returning to the ocean Yan, Wenjie Wang, Zhaohua Zhou, Bin Heliyon Review Article Seagrasses are higher flowering plants that live entirely in marine environments, with the greatest habitat variation occurring from land to sea. Genetic structure or population differentiation history is a hot topic in evolutionary biology, which is of great significance for understanding speciation. Genetic information is obtained from geographically distributed subpopulations, different subspecies, or strains of the same species using next-generation sequencing techniques. Genetic variation is identified by comparison with reference genomes. Genetic diversity is explored using population structure, principal component analysis (PCA), and phylogenetic relationships. Patterns of population genetic differentiation are elucidated by combining the isolation by distance (IBD) model, linkage disequilibrium levels, and genetic statistical analysis. Demographic history is simulated using effective population size, divergence time, and site frequency spectrum (SFS). Through various population genetic analyses, the genetic structure and historical population dynamics of seagrass can be clarified, and their evolutionary processes can be further explored at the molecular level to understand how evolutionary processes contributed to the formation of early ecological species and provide data support for seagrass conservation. Elsevier 2023-09-15 /pmc/articles/PMC10559988/ /pubmed/37809433 http://dx.doi.org/10.1016/j.heliyon.2023.e20231 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Review Article
Yan, Wenjie
Wang, Zhaohua
Zhou, Bin
Population evolution of seagrasses returning to the ocean
title Population evolution of seagrasses returning to the ocean
title_full Population evolution of seagrasses returning to the ocean
title_fullStr Population evolution of seagrasses returning to the ocean
title_full_unstemmed Population evolution of seagrasses returning to the ocean
title_short Population evolution of seagrasses returning to the ocean
title_sort population evolution of seagrasses returning to the ocean
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559988/
https://www.ncbi.nlm.nih.gov/pubmed/37809433
http://dx.doi.org/10.1016/j.heliyon.2023.e20231
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