Cargando…
Machine learning electronic structure methods based on the one-electron reduced density matrix
The theorems of density functional theory (DFT) establish bijective maps between the local external potential of a many-body system and its electron density, wavefunction and, therefore, one-particle reduced density matrix. Building on this foundation, we show that machine learning models based on t...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10560258/ https://www.ncbi.nlm.nih.gov/pubmed/37805614 http://dx.doi.org/10.1038/s41467-023-41953-9 |
_version_ | 1785117693175660544 |
---|---|
author | Shao, Xuecheng Paetow, Lukas Tuckerman, Mark E. Pavanello, Michele |
author_facet | Shao, Xuecheng Paetow, Lukas Tuckerman, Mark E. Pavanello, Michele |
author_sort | Shao, Xuecheng |
collection | PubMed |
description | The theorems of density functional theory (DFT) establish bijective maps between the local external potential of a many-body system and its electron density, wavefunction and, therefore, one-particle reduced density matrix. Building on this foundation, we show that machine learning models based on the one-electron reduced density matrix can be used to generate surrogate electronic structure methods. We generate surrogates of local and hybrid DFT, Hartree-Fock and full configuration interaction theories for systems ranging from small molecules such as water to more complex compounds like benzene and propanol. The surrogate models use the one-electron reduced density matrix as the central quantity to be learned. From the predicted density matrices, we show that either standard quantum chemistry or a second machine-learning model can be used to compute molecular observables, energies, and atomic forces. The surrogate models can generate essentially anything that a standard electronic structure method can, ranging from band gaps and Kohn-Sham orbitals to energy-conserving ab-initio molecular dynamics simulations and infrared spectra, which account for anharmonicity and thermal effects, without the need to employ computationally expensive algorithms such as self-consistent field theory. The algorithms are packaged in an efficient and easy to use Python code, QMLearn, accessible on popular platforms. |
format | Online Article Text |
id | pubmed-10560258 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-105602582023-10-09 Machine learning electronic structure methods based on the one-electron reduced density matrix Shao, Xuecheng Paetow, Lukas Tuckerman, Mark E. Pavanello, Michele Nat Commun Article The theorems of density functional theory (DFT) establish bijective maps between the local external potential of a many-body system and its electron density, wavefunction and, therefore, one-particle reduced density matrix. Building on this foundation, we show that machine learning models based on the one-electron reduced density matrix can be used to generate surrogate electronic structure methods. We generate surrogates of local and hybrid DFT, Hartree-Fock and full configuration interaction theories for systems ranging from small molecules such as water to more complex compounds like benzene and propanol. The surrogate models use the one-electron reduced density matrix as the central quantity to be learned. From the predicted density matrices, we show that either standard quantum chemistry or a second machine-learning model can be used to compute molecular observables, energies, and atomic forces. The surrogate models can generate essentially anything that a standard electronic structure method can, ranging from band gaps and Kohn-Sham orbitals to energy-conserving ab-initio molecular dynamics simulations and infrared spectra, which account for anharmonicity and thermal effects, without the need to employ computationally expensive algorithms such as self-consistent field theory. The algorithms are packaged in an efficient and easy to use Python code, QMLearn, accessible on popular platforms. Nature Publishing Group UK 2023-10-07 /pmc/articles/PMC10560258/ /pubmed/37805614 http://dx.doi.org/10.1038/s41467-023-41953-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Shao, Xuecheng Paetow, Lukas Tuckerman, Mark E. Pavanello, Michele Machine learning electronic structure methods based on the one-electron reduced density matrix |
title | Machine learning electronic structure methods based on the one-electron reduced density matrix |
title_full | Machine learning electronic structure methods based on the one-electron reduced density matrix |
title_fullStr | Machine learning electronic structure methods based on the one-electron reduced density matrix |
title_full_unstemmed | Machine learning electronic structure methods based on the one-electron reduced density matrix |
title_short | Machine learning electronic structure methods based on the one-electron reduced density matrix |
title_sort | machine learning electronic structure methods based on the one-electron reduced density matrix |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10560258/ https://www.ncbi.nlm.nih.gov/pubmed/37805614 http://dx.doi.org/10.1038/s41467-023-41953-9 |
work_keys_str_mv | AT shaoxuecheng machinelearningelectronicstructuremethodsbasedontheoneelectronreduceddensitymatrix AT paetowlukas machinelearningelectronicstructuremethodsbasedontheoneelectronreduceddensitymatrix AT tuckermanmarke machinelearningelectronicstructuremethodsbasedontheoneelectronreduceddensitymatrix AT pavanellomichele machinelearningelectronicstructuremethodsbasedontheoneelectronreduceddensitymatrix |