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Children are small adults (when properly normalized): Transferrable/generalizable sepsis prediction

BACKGROUND: Though governed by the same underlying biology, the differential physiology of children causes the temporal evolution from health to a septic/diseased state to follow trajectories that are distinct from adult cases. As pediatric sepsis data sets are less readily available than for adult...

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Autores principales: Marassi, Caitlin, Socia, Damien, Larie, Dale, An, Gary, Cockrell, R. Chase
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10561114/
https://www.ncbi.nlm.nih.gov/pubmed/37818461
http://dx.doi.org/10.1016/j.sopen.2023.09.013
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author Marassi, Caitlin
Socia, Damien
Larie, Dale
An, Gary
Cockrell, R. Chase
author_facet Marassi, Caitlin
Socia, Damien
Larie, Dale
An, Gary
Cockrell, R. Chase
author_sort Marassi, Caitlin
collection PubMed
description BACKGROUND: Though governed by the same underlying biology, the differential physiology of children causes the temporal evolution from health to a septic/diseased state to follow trajectories that are distinct from adult cases. As pediatric sepsis data sets are less readily available than for adult sepsis, we aim to leverage this shared underlying biology by normalizing pediatric physiological data such that it would be directly comparable to adult data, and then develop machine-learning (ML) based classifiers to predict the onset of sepsis in the pediatric population. We then externally validated the classifiers in an independent adult dataset. METHODS: Vital signs and laboratory observables were obtained from the Pediatric Intensive Care (PIC) database. These data elements were normalized for age and placed on a continuous scale, termed the Continuous Age-Normalized SOFA (CAN-SOFA) score. The XGBoost algorithm was used to classify pediatric patients that are septic. We tested the trained model using adult data from the MIMIC-IV database. RESULTS: On the pediatric population, the sepsis classifier has an accuracy of 0.84 and an F1-Score of 0.867. On the adult population, the sepsis classifier has an accuracy of 0.80 and an F1-score of 0.88; when tested on the adult population, the model showed similar performance degradation (“data drift”) as in the pediatric population. CONCLUSIONS: In this work, we demonstrate that, using a straightforward age-normalization method, EHR's can be generalizable compared (at least in the context of sepsis) between the pediatric and adult populations.
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spelling pubmed-105611142023-10-10 Children are small adults (when properly normalized): Transferrable/generalizable sepsis prediction Marassi, Caitlin Socia, Damien Larie, Dale An, Gary Cockrell, R. Chase Surg Open Sci Research Paper BACKGROUND: Though governed by the same underlying biology, the differential physiology of children causes the temporal evolution from health to a septic/diseased state to follow trajectories that are distinct from adult cases. As pediatric sepsis data sets are less readily available than for adult sepsis, we aim to leverage this shared underlying biology by normalizing pediatric physiological data such that it would be directly comparable to adult data, and then develop machine-learning (ML) based classifiers to predict the onset of sepsis in the pediatric population. We then externally validated the classifiers in an independent adult dataset. METHODS: Vital signs and laboratory observables were obtained from the Pediatric Intensive Care (PIC) database. These data elements were normalized for age and placed on a continuous scale, termed the Continuous Age-Normalized SOFA (CAN-SOFA) score. The XGBoost algorithm was used to classify pediatric patients that are septic. We tested the trained model using adult data from the MIMIC-IV database. RESULTS: On the pediatric population, the sepsis classifier has an accuracy of 0.84 and an F1-Score of 0.867. On the adult population, the sepsis classifier has an accuracy of 0.80 and an F1-score of 0.88; when tested on the adult population, the model showed similar performance degradation (“data drift”) as in the pediatric population. CONCLUSIONS: In this work, we demonstrate that, using a straightforward age-normalization method, EHR's can be generalizable compared (at least in the context of sepsis) between the pediatric and adult populations. Elsevier 2023-09-22 /pmc/articles/PMC10561114/ /pubmed/37818461 http://dx.doi.org/10.1016/j.sopen.2023.09.013 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Paper
Marassi, Caitlin
Socia, Damien
Larie, Dale
An, Gary
Cockrell, R. Chase
Children are small adults (when properly normalized): Transferrable/generalizable sepsis prediction
title Children are small adults (when properly normalized): Transferrable/generalizable sepsis prediction
title_full Children are small adults (when properly normalized): Transferrable/generalizable sepsis prediction
title_fullStr Children are small adults (when properly normalized): Transferrable/generalizable sepsis prediction
title_full_unstemmed Children are small adults (when properly normalized): Transferrable/generalizable sepsis prediction
title_short Children are small adults (when properly normalized): Transferrable/generalizable sepsis prediction
title_sort children are small adults (when properly normalized): transferrable/generalizable sepsis prediction
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10561114/
https://www.ncbi.nlm.nih.gov/pubmed/37818461
http://dx.doi.org/10.1016/j.sopen.2023.09.013
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