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Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres

This dataset reflects the parallel execution profiles of five Quantum ESPRESSO simulation (QE) versions in finding the total energy of the Cerium Oxide lattice using the self-consistent field (SCF) method. The data analysis used a strong scale setting to identify the optimal parameters and computing...

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Autores principales: Marurngsith, Worawan, Waiphinit, Supakiet, Rosmode, Wiraporn, Bavontaweepanya, Ruchipas, Fan, Jiaxin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10562675/
https://www.ncbi.nlm.nih.gov/pubmed/37823065
http://dx.doi.org/10.1016/j.dib.2023.109614
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author Marurngsith, Worawan
Waiphinit, Supakiet
Rosmode, Wiraporn
Bavontaweepanya, Ruchipas
Fan, Jiaxin
author_facet Marurngsith, Worawan
Waiphinit, Supakiet
Rosmode, Wiraporn
Bavontaweepanya, Ruchipas
Fan, Jiaxin
author_sort Marurngsith, Worawan
collection PubMed
description This dataset reflects the parallel execution profiles of five Quantum ESPRESSO simulation (QE) versions in finding the total energy of the Cerium Oxide lattice using the self-consistent field (SCF) method. The data analysis used a strong scale setting to identify the optimal parameters and computing resources needed to complete a single SCF loop for one specific material efficiently. This analysis notably contributed to achieving the Best Performance Award at the 5th APAC HPC-AI Competition. The data comprises three sets. The first set features the parallel execution traces captured via the Extrae performance profiling tool, offering a broad view of the QE's model execution behaviour and how it used computational resources. The second set records how long QE's model ran on a single node at three HPC centres: ThaiSC TARA in Thailand, NSCC ASPIRE-1 in Singapore, and NCI Gadi in Australia. This set focuses on the impact of adjusting three parameters for K-point parallelisation. The final set presents benchmarking data generated by scaling out the QE's model across 32 nodes (1,536 CPU cores) on the NCI Gadi supercomputer. Despite its focus on a single material, the dataset serves as a roadmap for researchers to estimate required computational resources and understand scalability bottlenecks, offering general guidelines adaptable across different HPC systems.
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spelling pubmed-105626752023-10-11 Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres Marurngsith, Worawan Waiphinit, Supakiet Rosmode, Wiraporn Bavontaweepanya, Ruchipas Fan, Jiaxin Data Brief Data Article This dataset reflects the parallel execution profiles of five Quantum ESPRESSO simulation (QE) versions in finding the total energy of the Cerium Oxide lattice using the self-consistent field (SCF) method. The data analysis used a strong scale setting to identify the optimal parameters and computing resources needed to complete a single SCF loop for one specific material efficiently. This analysis notably contributed to achieving the Best Performance Award at the 5th APAC HPC-AI Competition. The data comprises three sets. The first set features the parallel execution traces captured via the Extrae performance profiling tool, offering a broad view of the QE's model execution behaviour and how it used computational resources. The second set records how long QE's model ran on a single node at three HPC centres: ThaiSC TARA in Thailand, NSCC ASPIRE-1 in Singapore, and NCI Gadi in Australia. This set focuses on the impact of adjusting three parameters for K-point parallelisation. The final set presents benchmarking data generated by scaling out the QE's model across 32 nodes (1,536 CPU cores) on the NCI Gadi supercomputer. Despite its focus on a single material, the dataset serves as a roadmap for researchers to estimate required computational resources and understand scalability bottlenecks, offering general guidelines adaptable across different HPC systems. Elsevier 2023-09-28 /pmc/articles/PMC10562675/ /pubmed/37823065 http://dx.doi.org/10.1016/j.dib.2023.109614 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Marurngsith, Worawan
Waiphinit, Supakiet
Rosmode, Wiraporn
Bavontaweepanya, Ruchipas
Fan, Jiaxin
Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres
title Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres
title_full Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres
title_fullStr Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres
title_full_unstemmed Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres
title_short Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres
title_sort performance and profiling data of plane-wave calculations in quantum espresso simulation on three supercomputing centres
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10562675/
https://www.ncbi.nlm.nih.gov/pubmed/37823065
http://dx.doi.org/10.1016/j.dib.2023.109614
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