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Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria

The success of preclinical research hinges on exploratory and confirmatory animal studies. Traditional null hypothesis significance testing is a common approach to eliminate the chaff from a collection of drugs, so that only the most promising treatments are funneled through to clinical research pha...

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Autor principal: Kelter, Riko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10563376/
https://www.ncbi.nlm.nih.gov/pubmed/37519294
http://dx.doi.org/10.1177/09622802231184636
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author Kelter, Riko
author_facet Kelter, Riko
author_sort Kelter, Riko
collection PubMed
description The success of preclinical research hinges on exploratory and confirmatory animal studies. Traditional null hypothesis significance testing is a common approach to eliminate the chaff from a collection of drugs, so that only the most promising treatments are funneled through to clinical research phases. Balancing the number of false discoveries and false omissions is an important aspect to consider during this process. In this paper, we compare several preclinical research pipelines, either based on null hypothesis significance testing or based on Bayesian statistical decision criteria. We build on a recently published large-scale meta-analysis of reported effect sizes in preclinical animal research and elicit a non-informative prior distribution under which both approaches are compared. After correcting for publication bias and shrinkage of effect sizes in replication studies, simulations show that (i) a shift towards statistical approaches which explicitly incorporate the minimum clinically important difference reduces the false discovery rate of frequentist approaches and (ii) a shift towards Bayesian statistical decision criteria can improve the reliability of preclinical animal research by reducing the number of false-positive findings. It is shown that these benefits hold while keeping the number of experimental units low which are required for a confirmatory follow-up study. Results show that Bayesian statistical decision criteria can help in improving the reliability of preclinical animal research and should be considered more frequently in practice.
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spelling pubmed-105633762023-10-11 Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria Kelter, Riko Stat Methods Med Res Original Research Articles The success of preclinical research hinges on exploratory and confirmatory animal studies. Traditional null hypothesis significance testing is a common approach to eliminate the chaff from a collection of drugs, so that only the most promising treatments are funneled through to clinical research phases. Balancing the number of false discoveries and false omissions is an important aspect to consider during this process. In this paper, we compare several preclinical research pipelines, either based on null hypothesis significance testing or based on Bayesian statistical decision criteria. We build on a recently published large-scale meta-analysis of reported effect sizes in preclinical animal research and elicit a non-informative prior distribution under which both approaches are compared. After correcting for publication bias and shrinkage of effect sizes in replication studies, simulations show that (i) a shift towards statistical approaches which explicitly incorporate the minimum clinically important difference reduces the false discovery rate of frequentist approaches and (ii) a shift towards Bayesian statistical decision criteria can improve the reliability of preclinical animal research by reducing the number of false-positive findings. It is shown that these benefits hold while keeping the number of experimental units low which are required for a confirmatory follow-up study. Results show that Bayesian statistical decision criteria can help in improving the reliability of preclinical animal research and should be considered more frequently in practice. SAGE Publications 2023-07-31 2023-10 /pmc/articles/PMC10563376/ /pubmed/37519294 http://dx.doi.org/10.1177/09622802231184636 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Research Articles
Kelter, Riko
Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria
title Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria
title_full Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria
title_fullStr Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria
title_full_unstemmed Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria
title_short Reducing the false discovery rate of preclinical animal research with Bayesian statistical decision criteria
title_sort reducing the false discovery rate of preclinical animal research with bayesian statistical decision criteria
topic Original Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10563376/
https://www.ncbi.nlm.nih.gov/pubmed/37519294
http://dx.doi.org/10.1177/09622802231184636
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