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Molecular docking analysis of KRAS inhibitors for cancer management

The majority of human tumors are characterized by abnormal signaling caused by oncogenic RAS proteins. KRAS is a member of the RAS family and is currently one of the most thoroughly researched targets for cancer treatment due to its prevalence in a variety of deadly malignancies. Targeting the KRAS...

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Autores principales: J. Hakeem, Israa, Alsharif, Fatmah Hazza, Aljadani, Majidah, Fahad Alabbas, Ibrahim, Faqihi, Mohammed Saud, Aloufi, Ahmed Hamdan, Almutairi, Wael Abdullah, Akber, Asif Hussain, Alam, Qamre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10563554/
https://www.ncbi.nlm.nih.gov/pubmed/37822837
http://dx.doi.org/10.6026/97320630019411
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author J. Hakeem, Israa
Alsharif, Fatmah Hazza
Aljadani, Majidah
Fahad Alabbas, Ibrahim
Faqihi, Mohammed Saud
Aloufi, Ahmed Hamdan
Almutairi, Wael Abdullah
Akber, Asif Hussain
Alam, Qamre
author_facet J. Hakeem, Israa
Alsharif, Fatmah Hazza
Aljadani, Majidah
Fahad Alabbas, Ibrahim
Faqihi, Mohammed Saud
Aloufi, Ahmed Hamdan
Almutairi, Wael Abdullah
Akber, Asif Hussain
Alam, Qamre
author_sort J. Hakeem, Israa
collection PubMed
description The majority of human tumors are characterized by abnormal signaling caused by oncogenic RAS proteins. KRAS is a member of the RAS family and is currently one of the most thoroughly researched targets for cancer treatment due to its prevalence in a variety of deadly malignancies. Targeting the KRAS protein, which plays a crucial role in regulating cell growth, differentiation, and apoptosis, shows great potential as a strategy for fighting cancer. Herein, in silico screening of 530 natural compounds against KRAS protein was performed. The top-scoring hits, namely ZINC32502206, ZINC98363763, ZINC85645815, and ZINC98364259 displayed a robust affinity towards KRAS as evidenced by their respective binding affinity values of -10.50, -10.01, -9.80, and -9.70 kcal/mol, respectively which were notably higher than that of the control compound AMG 510 (-9.10 kcal/mol). Through virtual screening and visual inspection, it was observed that these hits effectively interacted with the essential residues located within the active site of KRAS. Based on the findings of this study, it can be inferred that these compounds may have the potential to be employed in the treatment of cancer by targeting KRAS.
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spelling pubmed-105635542023-10-11 Molecular docking analysis of KRAS inhibitors for cancer management J. Hakeem, Israa Alsharif, Fatmah Hazza Aljadani, Majidah Fahad Alabbas, Ibrahim Faqihi, Mohammed Saud Aloufi, Ahmed Hamdan Almutairi, Wael Abdullah Akber, Asif Hussain Alam, Qamre Bioinformation Research Article The majority of human tumors are characterized by abnormal signaling caused by oncogenic RAS proteins. KRAS is a member of the RAS family and is currently one of the most thoroughly researched targets for cancer treatment due to its prevalence in a variety of deadly malignancies. Targeting the KRAS protein, which plays a crucial role in regulating cell growth, differentiation, and apoptosis, shows great potential as a strategy for fighting cancer. Herein, in silico screening of 530 natural compounds against KRAS protein was performed. The top-scoring hits, namely ZINC32502206, ZINC98363763, ZINC85645815, and ZINC98364259 displayed a robust affinity towards KRAS as evidenced by their respective binding affinity values of -10.50, -10.01, -9.80, and -9.70 kcal/mol, respectively which were notably higher than that of the control compound AMG 510 (-9.10 kcal/mol). Through virtual screening and visual inspection, it was observed that these hits effectively interacted with the essential residues located within the active site of KRAS. Based on the findings of this study, it can be inferred that these compounds may have the potential to be employed in the treatment of cancer by targeting KRAS. Biomedical Informatics 2023-04-30 /pmc/articles/PMC10563554/ /pubmed/37822837 http://dx.doi.org/10.6026/97320630019411 Text en © 2023 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Research Article
J. Hakeem, Israa
Alsharif, Fatmah Hazza
Aljadani, Majidah
Fahad Alabbas, Ibrahim
Faqihi, Mohammed Saud
Aloufi, Ahmed Hamdan
Almutairi, Wael Abdullah
Akber, Asif Hussain
Alam, Qamre
Molecular docking analysis of KRAS inhibitors for cancer management
title Molecular docking analysis of KRAS inhibitors for cancer management
title_full Molecular docking analysis of KRAS inhibitors for cancer management
title_fullStr Molecular docking analysis of KRAS inhibitors for cancer management
title_full_unstemmed Molecular docking analysis of KRAS inhibitors for cancer management
title_short Molecular docking analysis of KRAS inhibitors for cancer management
title_sort molecular docking analysis of kras inhibitors for cancer management
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10563554/
https://www.ncbi.nlm.nih.gov/pubmed/37822837
http://dx.doi.org/10.6026/97320630019411
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