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Identification of senescence-related lncRNA prognostic index correlating with prognosis and radiosensitivity in prostate cancer patients

Background: An increasing number of studies are shown how crucial a role cellular senescence plays in tumor development. In this study, we developed a senescence-related lncRNA prognostic index (SRLPI) to forecast radiosensitivity and the probability of biochemical recurrence (BCR) in patients with...

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Autores principales: Feng, Dechao, Li, Li, Shi, Xu, Zhu, Weizhen, Wang, Jie, Wu, Ruicheng, Li, Dengxiong, Wei, Wuran, Han, Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10564441/
https://www.ncbi.nlm.nih.gov/pubmed/37742230
http://dx.doi.org/10.18632/aging.204888
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author Feng, Dechao
Li, Li
Shi, Xu
Zhu, Weizhen
Wang, Jie
Wu, Ruicheng
Li, Dengxiong
Wei, Wuran
Han, Ping
author_facet Feng, Dechao
Li, Li
Shi, Xu
Zhu, Weizhen
Wang, Jie
Wu, Ruicheng
Li, Dengxiong
Wei, Wuran
Han, Ping
author_sort Feng, Dechao
collection PubMed
description Background: An increasing number of studies are shown how crucial a role cellular senescence plays in tumor development. In this study, we developed a senescence-related lncRNA prognostic index (SRLPI) to forecast radiosensitivity and the probability of biochemical recurrence (BCR) in patients with prostate cancer (PCa). Methods: PCa cohorts in TCGA and GEO databases were downloaded. Senescence-and prognosis-related lncRNA with differential expression in tumor and normal samples were identified and used to establish the SRLPI score. Mutation landscape, function pathway, tumor stemness and heterogeneity and tumor immune microenvironment were also analyzed. We performed the analysis using R 3.6.3 and the appropriate tools. Results: A SRLPI score was constructed based on SNHG1 and MIAT in the TCGA cohort. Our classification of PCa patients into high- and low-risk groups was based on the median SRLPI score. When compared to the low-SRLPI group, the high-SRLPI group was more vulnerable to BCR (HR: 3.33). In terms of BCR-free survival and metastasis-free survival, the GSE116918 showed similar findings. Surprisingly, the SRLPI score demonstrated a high level of radiosensitivity for diagnosis (AUC: 0.98). Age, Gleason score, T stage, N stage, positive lymph nodes, and residual tumor were all significantly greater in patients with high SRLPI scores. Furthermore, this score was significantly related to markers of senescence. Protein secretion and androgen response were found to be substantially enriched in the low-SRLPI group, whereas E2F targets were found to be strongly enriched in the high-SRLPI group for pathway analysis. For the tumor microenvironment assessment, B cells, CD8+ T cells, immune score and TIDE score were positively related to SRLPI score while endothelial level was negatively associated with SRLPI score with statistical significance. Conclusions: We developed a SRLPI score that was related to prognosis and radiosensitivity and might be helpful in clinical practice.
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spelling pubmed-105644412023-10-11 Identification of senescence-related lncRNA prognostic index correlating with prognosis and radiosensitivity in prostate cancer patients Feng, Dechao Li, Li Shi, Xu Zhu, Weizhen Wang, Jie Wu, Ruicheng Li, Dengxiong Wei, Wuran Han, Ping Aging (Albany NY) Research Paper Background: An increasing number of studies are shown how crucial a role cellular senescence plays in tumor development. In this study, we developed a senescence-related lncRNA prognostic index (SRLPI) to forecast radiosensitivity and the probability of biochemical recurrence (BCR) in patients with prostate cancer (PCa). Methods: PCa cohorts in TCGA and GEO databases were downloaded. Senescence-and prognosis-related lncRNA with differential expression in tumor and normal samples were identified and used to establish the SRLPI score. Mutation landscape, function pathway, tumor stemness and heterogeneity and tumor immune microenvironment were also analyzed. We performed the analysis using R 3.6.3 and the appropriate tools. Results: A SRLPI score was constructed based on SNHG1 and MIAT in the TCGA cohort. Our classification of PCa patients into high- and low-risk groups was based on the median SRLPI score. When compared to the low-SRLPI group, the high-SRLPI group was more vulnerable to BCR (HR: 3.33). In terms of BCR-free survival and metastasis-free survival, the GSE116918 showed similar findings. Surprisingly, the SRLPI score demonstrated a high level of radiosensitivity for diagnosis (AUC: 0.98). Age, Gleason score, T stage, N stage, positive lymph nodes, and residual tumor were all significantly greater in patients with high SRLPI scores. Furthermore, this score was significantly related to markers of senescence. Protein secretion and androgen response were found to be substantially enriched in the low-SRLPI group, whereas E2F targets were found to be strongly enriched in the high-SRLPI group for pathway analysis. For the tumor microenvironment assessment, B cells, CD8+ T cells, immune score and TIDE score were positively related to SRLPI score while endothelial level was negatively associated with SRLPI score with statistical significance. Conclusions: We developed a SRLPI score that was related to prognosis and radiosensitivity and might be helpful in clinical practice. Impact Journals 2023-09-23 /pmc/articles/PMC10564441/ /pubmed/37742230 http://dx.doi.org/10.18632/aging.204888 Text en Copyright: © 2023 Feng et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Feng, Dechao
Li, Li
Shi, Xu
Zhu, Weizhen
Wang, Jie
Wu, Ruicheng
Li, Dengxiong
Wei, Wuran
Han, Ping
Identification of senescence-related lncRNA prognostic index correlating with prognosis and radiosensitivity in prostate cancer patients
title Identification of senescence-related lncRNA prognostic index correlating with prognosis and radiosensitivity in prostate cancer patients
title_full Identification of senescence-related lncRNA prognostic index correlating with prognosis and radiosensitivity in prostate cancer patients
title_fullStr Identification of senescence-related lncRNA prognostic index correlating with prognosis and radiosensitivity in prostate cancer patients
title_full_unstemmed Identification of senescence-related lncRNA prognostic index correlating with prognosis and radiosensitivity in prostate cancer patients
title_short Identification of senescence-related lncRNA prognostic index correlating with prognosis and radiosensitivity in prostate cancer patients
title_sort identification of senescence-related lncrna prognostic index correlating with prognosis and radiosensitivity in prostate cancer patients
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10564441/
https://www.ncbi.nlm.nih.gov/pubmed/37742230
http://dx.doi.org/10.18632/aging.204888
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