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Information theory-based direct causality measure to assess cardiac fibrillation dynamics
Understanding the mechanism sustaining cardiac fibrillation can facilitate the personalization of treatment. Granger causality analysis can be used to determine the existence of a hierarchical fibrillation mechanism that is more amenable to ablation treatment in cardiac time-series data. Conventiona...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10565370/ https://www.ncbi.nlm.nih.gov/pubmed/37817583 http://dx.doi.org/10.1098/rsif.2023.0443 |
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author | Shi, Xili Sau, Arunashis Li, Xinyang Patel, Kiran Bajaj, Nikesh Varela, Marta Wu, Huiyi Handa, Balvinder Arnold, Ahran Shun-Shin, Matthew Keene, Daniel Howard, James Whinnett, Zachary Peters, Nicholas Christensen, Kim Jensen, Henrik Jeldtoft Ng, Fu Siong |
author_facet | Shi, Xili Sau, Arunashis Li, Xinyang Patel, Kiran Bajaj, Nikesh Varela, Marta Wu, Huiyi Handa, Balvinder Arnold, Ahran Shun-Shin, Matthew Keene, Daniel Howard, James Whinnett, Zachary Peters, Nicholas Christensen, Kim Jensen, Henrik Jeldtoft Ng, Fu Siong |
author_sort | Shi, Xili |
collection | PubMed |
description | Understanding the mechanism sustaining cardiac fibrillation can facilitate the personalization of treatment. Granger causality analysis can be used to determine the existence of a hierarchical fibrillation mechanism that is more amenable to ablation treatment in cardiac time-series data. Conventional Granger causality based on linear predictability may fail if the assumption is not met or given sparsely sampled, high-dimensional data. More recently developed information theory-based causality measures could potentially provide a more accurate estimate of the nonlinear coupling. However, despite their successful application to linear and nonlinear physical systems, their use is not known in the clinical field. Partial mutual information from mixed embedding (PMIME) was implemented to identify the direct coupling of cardiac electrophysiology signals. We show that PMIME requires less data and is more robust to extrinsic confounding factors. The algorithms were then extended for efficient characterization of fibrillation organization and hierarchy using clinical high-dimensional data. We show that PMIME network measures correlate well with the spatio-temporal organization of fibrillation and demonstrated that hierarchical type of fibrillation and drivers could be identified in a subset of ventricular fibrillation patients, such that regions of high hierarchy are associated with high dominant frequency. |
format | Online Article Text |
id | pubmed-10565370 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-105653702023-10-12 Information theory-based direct causality measure to assess cardiac fibrillation dynamics Shi, Xili Sau, Arunashis Li, Xinyang Patel, Kiran Bajaj, Nikesh Varela, Marta Wu, Huiyi Handa, Balvinder Arnold, Ahran Shun-Shin, Matthew Keene, Daniel Howard, James Whinnett, Zachary Peters, Nicholas Christensen, Kim Jensen, Henrik Jeldtoft Ng, Fu Siong J R Soc Interface Life Sciences–Physics interface Understanding the mechanism sustaining cardiac fibrillation can facilitate the personalization of treatment. Granger causality analysis can be used to determine the existence of a hierarchical fibrillation mechanism that is more amenable to ablation treatment in cardiac time-series data. Conventional Granger causality based on linear predictability may fail if the assumption is not met or given sparsely sampled, high-dimensional data. More recently developed information theory-based causality measures could potentially provide a more accurate estimate of the nonlinear coupling. However, despite their successful application to linear and nonlinear physical systems, their use is not known in the clinical field. Partial mutual information from mixed embedding (PMIME) was implemented to identify the direct coupling of cardiac electrophysiology signals. We show that PMIME requires less data and is more robust to extrinsic confounding factors. The algorithms were then extended for efficient characterization of fibrillation organization and hierarchy using clinical high-dimensional data. We show that PMIME network measures correlate well with the spatio-temporal organization of fibrillation and demonstrated that hierarchical type of fibrillation and drivers could be identified in a subset of ventricular fibrillation patients, such that regions of high hierarchy are associated with high dominant frequency. The Royal Society 2023-10-11 /pmc/articles/PMC10565370/ /pubmed/37817583 http://dx.doi.org/10.1098/rsif.2023.0443 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Physics interface Shi, Xili Sau, Arunashis Li, Xinyang Patel, Kiran Bajaj, Nikesh Varela, Marta Wu, Huiyi Handa, Balvinder Arnold, Ahran Shun-Shin, Matthew Keene, Daniel Howard, James Whinnett, Zachary Peters, Nicholas Christensen, Kim Jensen, Henrik Jeldtoft Ng, Fu Siong Information theory-based direct causality measure to assess cardiac fibrillation dynamics |
title | Information theory-based direct causality measure to assess cardiac fibrillation dynamics |
title_full | Information theory-based direct causality measure to assess cardiac fibrillation dynamics |
title_fullStr | Information theory-based direct causality measure to assess cardiac fibrillation dynamics |
title_full_unstemmed | Information theory-based direct causality measure to assess cardiac fibrillation dynamics |
title_short | Information theory-based direct causality measure to assess cardiac fibrillation dynamics |
title_sort | information theory-based direct causality measure to assess cardiac fibrillation dynamics |
topic | Life Sciences–Physics interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10565370/ https://www.ncbi.nlm.nih.gov/pubmed/37817583 http://dx.doi.org/10.1098/rsif.2023.0443 |
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