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Genome assembly of the bearded iris, Iris pallida Lam.
Irises are perennial plants, representing a large genus with hundreds of species. While cultivated extensively for their ornamental value, commercial interest in irises lies in the secondary metabolites present in their rhizomes. The Dalmatian Iris (Iris pallida Lam.) is an ornamental plant that als...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
GigaScience Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10565908/ https://www.ncbi.nlm.nih.gov/pubmed/37829656 http://dx.doi.org/10.46471/gigabyte.94 |
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author | Bruccoleri, Robert E. Oakeley, Edward J. Faust, Ann Marie E. Altorfer, Marc Dessus-Babus, Sophie Burckhardt, David Oertli, Mevion Naumann, Ulrike Petersen, Frank Wong, Joanne |
author_facet | Bruccoleri, Robert E. Oakeley, Edward J. Faust, Ann Marie E. Altorfer, Marc Dessus-Babus, Sophie Burckhardt, David Oertli, Mevion Naumann, Ulrike Petersen, Frank Wong, Joanne |
author_sort | Bruccoleri, Robert E. |
collection | PubMed |
description | Irises are perennial plants, representing a large genus with hundreds of species. While cultivated extensively for their ornamental value, commercial interest in irises lies in the secondary metabolites present in their rhizomes. The Dalmatian Iris (Iris pallida Lam.) is an ornamental plant that also produces secondary metabolites with potential value to the fragrance and pharmaceutical industries. In addition to providing base notes for the fragrance industry, iris tissues and extracts possess antioxidant, anti-inflammatory and immunomodulatory effects. However, study of these secondary metabolites has been hampered by a lack of genomic information, requiring difficult extraction and analysis techniques. Here, we report the genome sequence of Iris pallida Lam., generated with Pacific Bioscience long-read sequencing, resulting in a 10.04-Gbp assembly with a scaffold N50 of 14.34 Mbp and 91.8% complete BUSCOs. This reference genome will allow researchers to study the biosynthesis of these secondary metabolites in much greater detail, opening new avenues of investigation for drug discovery and fragrance formulations. |
format | Online Article Text |
id | pubmed-10565908 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | GigaScience Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-105659082023-10-12 Genome assembly of the bearded iris, Iris pallida Lam. Bruccoleri, Robert E. Oakeley, Edward J. Faust, Ann Marie E. Altorfer, Marc Dessus-Babus, Sophie Burckhardt, David Oertli, Mevion Naumann, Ulrike Petersen, Frank Wong, Joanne GigaByte Data Release Irises are perennial plants, representing a large genus with hundreds of species. While cultivated extensively for their ornamental value, commercial interest in irises lies in the secondary metabolites present in their rhizomes. The Dalmatian Iris (Iris pallida Lam.) is an ornamental plant that also produces secondary metabolites with potential value to the fragrance and pharmaceutical industries. In addition to providing base notes for the fragrance industry, iris tissues and extracts possess antioxidant, anti-inflammatory and immunomodulatory effects. However, study of these secondary metabolites has been hampered by a lack of genomic information, requiring difficult extraction and analysis techniques. Here, we report the genome sequence of Iris pallida Lam., generated with Pacific Bioscience long-read sequencing, resulting in a 10.04-Gbp assembly with a scaffold N50 of 14.34 Mbp and 91.8% complete BUSCOs. This reference genome will allow researchers to study the biosynthesis of these secondary metabolites in much greater detail, opening new avenues of investigation for drug discovery and fragrance formulations. GigaScience Press 2023-10-05 /pmc/articles/PMC10565908/ /pubmed/37829656 http://dx.doi.org/10.46471/gigabyte.94 Text en © The Author(s) 2023. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Data Release Bruccoleri, Robert E. Oakeley, Edward J. Faust, Ann Marie E. Altorfer, Marc Dessus-Babus, Sophie Burckhardt, David Oertli, Mevion Naumann, Ulrike Petersen, Frank Wong, Joanne Genome assembly of the bearded iris, Iris pallida Lam. |
title | Genome assembly of the bearded iris, Iris pallida Lam. |
title_full | Genome assembly of the bearded iris, Iris pallida Lam. |
title_fullStr | Genome assembly of the bearded iris, Iris pallida Lam. |
title_full_unstemmed | Genome assembly of the bearded iris, Iris pallida Lam. |
title_short | Genome assembly of the bearded iris, Iris pallida Lam. |
title_sort | genome assembly of the bearded iris, iris pallida lam. |
topic | Data Release |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10565908/ https://www.ncbi.nlm.nih.gov/pubmed/37829656 http://dx.doi.org/10.46471/gigabyte.94 |
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