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Machine learning identification and immune infiltration of disulfidptosis‐related Alzheimer's disease molecular subtypes

BACKGROUND: Alzheimer's disease (AD) is a common neurodegenerative disorder. Disulfidptosis is a newly discovered form of programmed cell death that holds promise as a therapeutic strategy for various disorders. However, the functional roles of disulfidptosis‐related genes (DRGs) in AD remain u...

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Autores principales: Zhu, Yidong, Kong, Lingyue, Han, Tianxiong, Yan, Qiongzhi, Liu, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10566450/
https://www.ncbi.nlm.nih.gov/pubmed/37904698
http://dx.doi.org/10.1002/iid3.1037
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author Zhu, Yidong
Kong, Lingyue
Han, Tianxiong
Yan, Qiongzhi
Liu, Jun
author_facet Zhu, Yidong
Kong, Lingyue
Han, Tianxiong
Yan, Qiongzhi
Liu, Jun
author_sort Zhu, Yidong
collection PubMed
description BACKGROUND: Alzheimer's disease (AD) is a common neurodegenerative disorder. Disulfidptosis is a newly discovered form of programmed cell death that holds promise as a therapeutic strategy for various disorders. However, the functional roles of disulfidptosis‐related genes (DRGs) in AD remain unknown. METHODS: Microarray data and clinical information from patients with AD and healthy controls were downloaded from the Gene Expression Omnibus database. A thorough examination of DRG expression and immune characteristics in both groups was performed. Based on the identified DRGs, we performed an unsupervised clustering analysis to categorize the AD samples into various disulfidptosis‐related molecular clusters. Weighted gene co‐expression network analysis was performed to select hub genes specific to disulfidptosis‐related AD clusters. The performances of various machine learning models were compared to determine the optimal predictive model. The predictive ability of the optimal model was assessed using nomogram analysis and five external datasets. RESULTS: Eight DRGs showed differential expression between the AD and control samples. Two different molecular clusters were identified. The immune cell infiltration analysis revealed distinct differences in the immune microenvironment of the two clusters. The support vector machine model showed the highest performance, and a panel of five signature genes was identified, which showed excellent performance on the external validation datasets. The nomogram analysis also showed high accuracy in predicting AD. CONCLUSION: We identified disulfidptosis‐related molecular clusters in AD and established a novel risk model to assess the likelihood of developing AD. These findings revealed a complex association between disulfidptosis and AD, which may aid in identifying potential therapeutic targets for this debilitating disorder.
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spelling pubmed-105664502023-10-12 Machine learning identification and immune infiltration of disulfidptosis‐related Alzheimer's disease molecular subtypes Zhu, Yidong Kong, Lingyue Han, Tianxiong Yan, Qiongzhi Liu, Jun Immun Inflamm Dis Original Articles BACKGROUND: Alzheimer's disease (AD) is a common neurodegenerative disorder. Disulfidptosis is a newly discovered form of programmed cell death that holds promise as a therapeutic strategy for various disorders. However, the functional roles of disulfidptosis‐related genes (DRGs) in AD remain unknown. METHODS: Microarray data and clinical information from patients with AD and healthy controls were downloaded from the Gene Expression Omnibus database. A thorough examination of DRG expression and immune characteristics in both groups was performed. Based on the identified DRGs, we performed an unsupervised clustering analysis to categorize the AD samples into various disulfidptosis‐related molecular clusters. Weighted gene co‐expression network analysis was performed to select hub genes specific to disulfidptosis‐related AD clusters. The performances of various machine learning models were compared to determine the optimal predictive model. The predictive ability of the optimal model was assessed using nomogram analysis and five external datasets. RESULTS: Eight DRGs showed differential expression between the AD and control samples. Two different molecular clusters were identified. The immune cell infiltration analysis revealed distinct differences in the immune microenvironment of the two clusters. The support vector machine model showed the highest performance, and a panel of five signature genes was identified, which showed excellent performance on the external validation datasets. The nomogram analysis also showed high accuracy in predicting AD. CONCLUSION: We identified disulfidptosis‐related molecular clusters in AD and established a novel risk model to assess the likelihood of developing AD. These findings revealed a complex association between disulfidptosis and AD, which may aid in identifying potential therapeutic targets for this debilitating disorder. John Wiley and Sons Inc. 2023-10-11 /pmc/articles/PMC10566450/ /pubmed/37904698 http://dx.doi.org/10.1002/iid3.1037 Text en © 2023 The Authors. Immunity, Inflammation and Disease published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Zhu, Yidong
Kong, Lingyue
Han, Tianxiong
Yan, Qiongzhi
Liu, Jun
Machine learning identification and immune infiltration of disulfidptosis‐related Alzheimer's disease molecular subtypes
title Machine learning identification and immune infiltration of disulfidptosis‐related Alzheimer's disease molecular subtypes
title_full Machine learning identification and immune infiltration of disulfidptosis‐related Alzheimer's disease molecular subtypes
title_fullStr Machine learning identification and immune infiltration of disulfidptosis‐related Alzheimer's disease molecular subtypes
title_full_unstemmed Machine learning identification and immune infiltration of disulfidptosis‐related Alzheimer's disease molecular subtypes
title_short Machine learning identification and immune infiltration of disulfidptosis‐related Alzheimer's disease molecular subtypes
title_sort machine learning identification and immune infiltration of disulfidptosis‐related alzheimer's disease molecular subtypes
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10566450/
https://www.ncbi.nlm.nih.gov/pubmed/37904698
http://dx.doi.org/10.1002/iid3.1037
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