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Unsupervised machine learning method for indirect estimation of reference intervals for chronic kidney disease in the Puerto Rican population

Reference intervals (RIs) for clinical laboratory values are extremely important for diagnostics and treatment of patients. However, the determination of these ranges is costly and time-consuming. As a result, often different unverified RIs are used in practice for the same analyte and the same rang...

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Autores principales: Velev, Julian, LeBien, Jack, Roche-Lima, Abiel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10567761/
https://www.ncbi.nlm.nih.gov/pubmed/37821500
http://dx.doi.org/10.1038/s41598-023-43830-3
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author Velev, Julian
LeBien, Jack
Roche-Lima, Abiel
author_facet Velev, Julian
LeBien, Jack
Roche-Lima, Abiel
author_sort Velev, Julian
collection PubMed
description Reference intervals (RIs) for clinical laboratory values are extremely important for diagnostics and treatment of patients. However, the determination of these ranges is costly and time-consuming. As a result, often different unverified RIs are used in practice for the same analyte and the same range is used for all patients despite evidence that the values are gender, age, and ethnicity dependent. Moreover, the abnormal flags are rudimentary, merely indicating if a value is within the RI. At the same time, clinical lab data generated in the everyday medical practice contains a wealth of information, that given the correct methodology, can help determine the RIs for each specific segment of the population, including populations that suffer from health disparities. In this work, we develop unsupervised machine learning methods, based on Gaussian mixtures, to determine RIs of analytes related to chronic kidney disease, using millions of routine lab results for the Puerto Rican population. We show that the measures are both gender and age dependent and we find evidence for normal age-related organ function deterioration and failure. We also show that the joint distribution of measures improves the diagnostic value of the lab results.
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spelling pubmed-105677612023-10-13 Unsupervised machine learning method for indirect estimation of reference intervals for chronic kidney disease in the Puerto Rican population Velev, Julian LeBien, Jack Roche-Lima, Abiel Sci Rep Article Reference intervals (RIs) for clinical laboratory values are extremely important for diagnostics and treatment of patients. However, the determination of these ranges is costly and time-consuming. As a result, often different unverified RIs are used in practice for the same analyte and the same range is used for all patients despite evidence that the values are gender, age, and ethnicity dependent. Moreover, the abnormal flags are rudimentary, merely indicating if a value is within the RI. At the same time, clinical lab data generated in the everyday medical practice contains a wealth of information, that given the correct methodology, can help determine the RIs for each specific segment of the population, including populations that suffer from health disparities. In this work, we develop unsupervised machine learning methods, based on Gaussian mixtures, to determine RIs of analytes related to chronic kidney disease, using millions of routine lab results for the Puerto Rican population. We show that the measures are both gender and age dependent and we find evidence for normal age-related organ function deterioration and failure. We also show that the joint distribution of measures improves the diagnostic value of the lab results. Nature Publishing Group UK 2023-10-11 /pmc/articles/PMC10567761/ /pubmed/37821500 http://dx.doi.org/10.1038/s41598-023-43830-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Velev, Julian
LeBien, Jack
Roche-Lima, Abiel
Unsupervised machine learning method for indirect estimation of reference intervals for chronic kidney disease in the Puerto Rican population
title Unsupervised machine learning method for indirect estimation of reference intervals for chronic kidney disease in the Puerto Rican population
title_full Unsupervised machine learning method for indirect estimation of reference intervals for chronic kidney disease in the Puerto Rican population
title_fullStr Unsupervised machine learning method for indirect estimation of reference intervals for chronic kidney disease in the Puerto Rican population
title_full_unstemmed Unsupervised machine learning method for indirect estimation of reference intervals for chronic kidney disease in the Puerto Rican population
title_short Unsupervised machine learning method for indirect estimation of reference intervals for chronic kidney disease in the Puerto Rican population
title_sort unsupervised machine learning method for indirect estimation of reference intervals for chronic kidney disease in the puerto rican population
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10567761/
https://www.ncbi.nlm.nih.gov/pubmed/37821500
http://dx.doi.org/10.1038/s41598-023-43830-3
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