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Pyroptosis‐related gene signatures are associated with prognosis and tumor microenvironment infiltration in head and neck cancer

BACKGROUND AND AIMS: Recent studies have highlighted the biological significance of pyroptosis in cancer development. Nevertheless, it is still uncertain if pyroptosis also plays a part in immune modulation and the creation of the tumor microenvironment (TME). METHODS: The pyroptosis regulatory gene...

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Autores principales: Long, Yan, Wu, Yadong, Peng, Juxiang, Song, Jukun, Li, Na
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10568974/
https://www.ncbi.nlm.nih.gov/pubmed/37841942
http://dx.doi.org/10.1002/hsr2.1622
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author Long, Yan
Wu, Yadong
Peng, Juxiang
Song, Jukun
Li, Na
author_facet Long, Yan
Wu, Yadong
Peng, Juxiang
Song, Jukun
Li, Na
author_sort Long, Yan
collection PubMed
description BACKGROUND AND AIMS: Recent studies have highlighted the biological significance of pyroptosis in cancer development. Nevertheless, it is still uncertain if pyroptosis also plays a part in immune modulation and the creation of the tumor microenvironment (TME). METHODS: The pyroptosis regulatory genes (PRGs) were comprehensively assessed in 1938 head and neck cancer samples, and systematically correlated these modification patterns with the infiltration characteristics of TME cells. The unsupervised consensus analysis method was used to identify specific pyroptosis clusters. The single‐sample gene set enrichment analysis and CIBERSOFT algorithms were used to evaluate the infiltration levels of various immune cell subsets. A principal component analysis algorithm was used to construct the pyrolysis potential index (PPI) to quantify the pyrolysis regulation patterns in head and neck squamous cell carcinoma (HNSC). RESULTS: Pyrophosphate regulatory genes (PRGs) are often upregulated in tumors due to mutations. PRGs relate to various clinical outcomes and pathways. Molecular subtyping identified pyroptosis patterns, which align with three tumor immunophenotypes: immune‐inflamed, immune‐excluded, and immune‐desert. The PPI measures pyrolysis roles, showing higher PPI in tumor samples linked to subtypes and clinical characteristics. Lower PPI correlates with longer survival, increased immune activity, more tumor mutations, high PD‐L1 expression, and mutations in significant genes like PIK3CA. Such patients also experience enhanced immune responses in immunotherapy trials. CONCLUSION: We conducted a comprehensive examination of pyroptosis in HNSC and developed a PPI indicator that shows a strong correlation with the variety and intricacy of the TME.
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spelling pubmed-105689742023-10-13 Pyroptosis‐related gene signatures are associated with prognosis and tumor microenvironment infiltration in head and neck cancer Long, Yan Wu, Yadong Peng, Juxiang Song, Jukun Li, Na Health Sci Rep Original Research BACKGROUND AND AIMS: Recent studies have highlighted the biological significance of pyroptosis in cancer development. Nevertheless, it is still uncertain if pyroptosis also plays a part in immune modulation and the creation of the tumor microenvironment (TME). METHODS: The pyroptosis regulatory genes (PRGs) were comprehensively assessed in 1938 head and neck cancer samples, and systematically correlated these modification patterns with the infiltration characteristics of TME cells. The unsupervised consensus analysis method was used to identify specific pyroptosis clusters. The single‐sample gene set enrichment analysis and CIBERSOFT algorithms were used to evaluate the infiltration levels of various immune cell subsets. A principal component analysis algorithm was used to construct the pyrolysis potential index (PPI) to quantify the pyrolysis regulation patterns in head and neck squamous cell carcinoma (HNSC). RESULTS: Pyrophosphate regulatory genes (PRGs) are often upregulated in tumors due to mutations. PRGs relate to various clinical outcomes and pathways. Molecular subtyping identified pyroptosis patterns, which align with three tumor immunophenotypes: immune‐inflamed, immune‐excluded, and immune‐desert. The PPI measures pyrolysis roles, showing higher PPI in tumor samples linked to subtypes and clinical characteristics. Lower PPI correlates with longer survival, increased immune activity, more tumor mutations, high PD‐L1 expression, and mutations in significant genes like PIK3CA. Such patients also experience enhanced immune responses in immunotherapy trials. CONCLUSION: We conducted a comprehensive examination of pyroptosis in HNSC and developed a PPI indicator that shows a strong correlation with the variety and intricacy of the TME. John Wiley and Sons Inc. 2023-10-12 /pmc/articles/PMC10568974/ /pubmed/37841942 http://dx.doi.org/10.1002/hsr2.1622 Text en © 2023 The Authors. Health Science Reports published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Research
Long, Yan
Wu, Yadong
Peng, Juxiang
Song, Jukun
Li, Na
Pyroptosis‐related gene signatures are associated with prognosis and tumor microenvironment infiltration in head and neck cancer
title Pyroptosis‐related gene signatures are associated with prognosis and tumor microenvironment infiltration in head and neck cancer
title_full Pyroptosis‐related gene signatures are associated with prognosis and tumor microenvironment infiltration in head and neck cancer
title_fullStr Pyroptosis‐related gene signatures are associated with prognosis and tumor microenvironment infiltration in head and neck cancer
title_full_unstemmed Pyroptosis‐related gene signatures are associated with prognosis and tumor microenvironment infiltration in head and neck cancer
title_short Pyroptosis‐related gene signatures are associated with prognosis and tumor microenvironment infiltration in head and neck cancer
title_sort pyroptosis‐related gene signatures are associated with prognosis and tumor microenvironment infiltration in head and neck cancer
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10568974/
https://www.ncbi.nlm.nih.gov/pubmed/37841942
http://dx.doi.org/10.1002/hsr2.1622
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