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Preliminary assessment of three quantitative approaches for estimating time-since-deposition from autofluorescence and morphological profiles of cell populations from forensic biological samples

Determining when DNA recovered from a crime scene transferred from its biological source, i.e., a sample’s ‘time-since-deposition’ (TSD), can provide critical context for biological evidence. Yet, there remains no analytical techniques for TSD that are validated for forensic casework. In this study,...

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Autores principales: Gentry, Amanda Elswick, Ingram, Sarah, Philpott, M. Katherine, Archer, Kellie J., Ehrhardt, Christopher J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10569564/
https://www.ncbi.nlm.nih.gov/pubmed/37824498
http://dx.doi.org/10.1371/journal.pone.0292789
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author Gentry, Amanda Elswick
Ingram, Sarah
Philpott, M. Katherine
Archer, Kellie J.
Ehrhardt, Christopher J.
author_facet Gentry, Amanda Elswick
Ingram, Sarah
Philpott, M. Katherine
Archer, Kellie J.
Ehrhardt, Christopher J.
author_sort Gentry, Amanda Elswick
collection PubMed
description Determining when DNA recovered from a crime scene transferred from its biological source, i.e., a sample’s ‘time-since-deposition’ (TSD), can provide critical context for biological evidence. Yet, there remains no analytical techniques for TSD that are validated for forensic casework. In this study, we investigate whether morphological and autofluorescence measurements of forensically-relevant cell populations generated with Imaging Flow Cytometry (IFC) can be used to predict the TSD of ‘touch’ or trace biological samples. To this end, three different prediction frameworks for estimating the number of day(s) for TSD were evaluated: the elastic net, gradient boosting machines (GBM), and generalized linear mixed model (GLMM) LASSO. Additionally, we transformed these continuous predictions into a series of binary classifiers to evaluate the potential utility for forensic casework. Results showed that GBM and GLMM-LASSO showed the highest accuracy, with mean absolute error estimates in a hold-out test set of 29 and 21 days, respectively. Binary classifiers for these models correctly binned 94–96% and 98–99% of the age estimates as over/under 7 or 180 days, respectively. This suggests that predicted TSD using IFC measurements coupled to one or, possibly, a combination binary classification decision rules, may provide probative information for trace biological samples encountered during forensic casework.
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spelling pubmed-105695642023-10-13 Preliminary assessment of three quantitative approaches for estimating time-since-deposition from autofluorescence and morphological profiles of cell populations from forensic biological samples Gentry, Amanda Elswick Ingram, Sarah Philpott, M. Katherine Archer, Kellie J. Ehrhardt, Christopher J. PLoS One Research Article Determining when DNA recovered from a crime scene transferred from its biological source, i.e., a sample’s ‘time-since-deposition’ (TSD), can provide critical context for biological evidence. Yet, there remains no analytical techniques for TSD that are validated for forensic casework. In this study, we investigate whether morphological and autofluorescence measurements of forensically-relevant cell populations generated with Imaging Flow Cytometry (IFC) can be used to predict the TSD of ‘touch’ or trace biological samples. To this end, three different prediction frameworks for estimating the number of day(s) for TSD were evaluated: the elastic net, gradient boosting machines (GBM), and generalized linear mixed model (GLMM) LASSO. Additionally, we transformed these continuous predictions into a series of binary classifiers to evaluate the potential utility for forensic casework. Results showed that GBM and GLMM-LASSO showed the highest accuracy, with mean absolute error estimates in a hold-out test set of 29 and 21 days, respectively. Binary classifiers for these models correctly binned 94–96% and 98–99% of the age estimates as over/under 7 or 180 days, respectively. This suggests that predicted TSD using IFC measurements coupled to one or, possibly, a combination binary classification decision rules, may provide probative information for trace biological samples encountered during forensic casework. Public Library of Science 2023-10-12 /pmc/articles/PMC10569564/ /pubmed/37824498 http://dx.doi.org/10.1371/journal.pone.0292789 Text en © 2023 Gentry et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Gentry, Amanda Elswick
Ingram, Sarah
Philpott, M. Katherine
Archer, Kellie J.
Ehrhardt, Christopher J.
Preliminary assessment of three quantitative approaches for estimating time-since-deposition from autofluorescence and morphological profiles of cell populations from forensic biological samples
title Preliminary assessment of three quantitative approaches for estimating time-since-deposition from autofluorescence and morphological profiles of cell populations from forensic biological samples
title_full Preliminary assessment of three quantitative approaches for estimating time-since-deposition from autofluorescence and morphological profiles of cell populations from forensic biological samples
title_fullStr Preliminary assessment of three quantitative approaches for estimating time-since-deposition from autofluorescence and morphological profiles of cell populations from forensic biological samples
title_full_unstemmed Preliminary assessment of three quantitative approaches for estimating time-since-deposition from autofluorescence and morphological profiles of cell populations from forensic biological samples
title_short Preliminary assessment of three quantitative approaches for estimating time-since-deposition from autofluorescence and morphological profiles of cell populations from forensic biological samples
title_sort preliminary assessment of three quantitative approaches for estimating time-since-deposition from autofluorescence and morphological profiles of cell populations from forensic biological samples
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10569564/
https://www.ncbi.nlm.nih.gov/pubmed/37824498
http://dx.doi.org/10.1371/journal.pone.0292789
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