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Polyp characterization using deep learning and a publicly accessible polyp video database

OBJECTIVES: Convolutional neural networks (CNN) for computer‐aided diagnosis of polyps are often trained using high‐quality still images in a single chromoendoscopy imaging modality with sessile serrated lesions (SSLs) often excluded. This study developed a CNN from videos to classify polyps as aden...

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Autores principales: Kader, Rawen, Cid‐Mejias, Anton, Brandao, Patrick, Islam, Shahraz, Hebbar, Sanjith, Puyal, Juana González‐Bueno, Ahmad, Omer F., Hussein, Mohamed, Toth, Daniel, Mountney, Peter, Seward, Ed, Vega, Roser, Stoyanov, Danail, Lovat, Laurence B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10570984/
https://www.ncbi.nlm.nih.gov/pubmed/36527309
http://dx.doi.org/10.1111/den.14500
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author Kader, Rawen
Cid‐Mejias, Anton
Brandao, Patrick
Islam, Shahraz
Hebbar, Sanjith
Puyal, Juana González‐Bueno
Ahmad, Omer F.
Hussein, Mohamed
Toth, Daniel
Mountney, Peter
Seward, Ed
Vega, Roser
Stoyanov, Danail
Lovat, Laurence B.
author_facet Kader, Rawen
Cid‐Mejias, Anton
Brandao, Patrick
Islam, Shahraz
Hebbar, Sanjith
Puyal, Juana González‐Bueno
Ahmad, Omer F.
Hussein, Mohamed
Toth, Daniel
Mountney, Peter
Seward, Ed
Vega, Roser
Stoyanov, Danail
Lovat, Laurence B.
author_sort Kader, Rawen
collection PubMed
description OBJECTIVES: Convolutional neural networks (CNN) for computer‐aided diagnosis of polyps are often trained using high‐quality still images in a single chromoendoscopy imaging modality with sessile serrated lesions (SSLs) often excluded. This study developed a CNN from videos to classify polyps as adenomatous or nonadenomatous using standard narrow‐band imaging (NBI) and NBI‐near focus (NBI‐NF) and created a publicly accessible polyp video database. METHODS: We trained a CNN with 16,832 high and moderate quality frames from 229 polyp videos (56 SSLs). It was evaluated with 222 polyp videos (36 SSLs) across two test‐sets. Test‐set I consists of 14,320 frames (157 polyps, 111 diminutive). Test‐set II, which is publicly accessible, 3317 video frames (65 polyps, 41 diminutive), which was benchmarked with three expert and three nonexpert endoscopists. RESULTS: Sensitivity for adenoma characterization was 91.6% in test‐set I and 89.7% in test‐set II. Specificity was 91.9% and 88.5%. Sensitivity for diminutive polyps was 89.9% and 87.5%; specificity 90.5% and 88.2%. In NBI‐NF, sensitivity was 89.4% and 89.5%, with a specificity of 94.7% and 83.3%. In NBI, sensitivity was 85.3% and 91.7%, with a specificity of 87.5% and 90.0%, respectively. The CNN achieved preservation and incorporation of valuable endoscopic innovations (PIVI)‐1 and PIVI‐2 thresholds for each test‐set. In the benchmarking of test‐set II, the CNN was significantly more accurate than nonexperts (13.8% difference [95% confidence interval 3.2–23.6], P = 0.01) with no significant difference with experts. CONCLUSIONS: A single CNN can differentiate adenomas from SSLs and hyperplastic polyps in both NBI and NBI‐NF. A publicly accessible NBI polyp video database was created and benchmarked.
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spelling pubmed-105709842023-10-14 Polyp characterization using deep learning and a publicly accessible polyp video database Kader, Rawen Cid‐Mejias, Anton Brandao, Patrick Islam, Shahraz Hebbar, Sanjith Puyal, Juana González‐Bueno Ahmad, Omer F. Hussein, Mohamed Toth, Daniel Mountney, Peter Seward, Ed Vega, Roser Stoyanov, Danail Lovat, Laurence B. Dig Endosc Original Articles OBJECTIVES: Convolutional neural networks (CNN) for computer‐aided diagnosis of polyps are often trained using high‐quality still images in a single chromoendoscopy imaging modality with sessile serrated lesions (SSLs) often excluded. This study developed a CNN from videos to classify polyps as adenomatous or nonadenomatous using standard narrow‐band imaging (NBI) and NBI‐near focus (NBI‐NF) and created a publicly accessible polyp video database. METHODS: We trained a CNN with 16,832 high and moderate quality frames from 229 polyp videos (56 SSLs). It was evaluated with 222 polyp videos (36 SSLs) across two test‐sets. Test‐set I consists of 14,320 frames (157 polyps, 111 diminutive). Test‐set II, which is publicly accessible, 3317 video frames (65 polyps, 41 diminutive), which was benchmarked with three expert and three nonexpert endoscopists. RESULTS: Sensitivity for adenoma characterization was 91.6% in test‐set I and 89.7% in test‐set II. Specificity was 91.9% and 88.5%. Sensitivity for diminutive polyps was 89.9% and 87.5%; specificity 90.5% and 88.2%. In NBI‐NF, sensitivity was 89.4% and 89.5%, with a specificity of 94.7% and 83.3%. In NBI, sensitivity was 85.3% and 91.7%, with a specificity of 87.5% and 90.0%, respectively. The CNN achieved preservation and incorporation of valuable endoscopic innovations (PIVI)‐1 and PIVI‐2 thresholds for each test‐set. In the benchmarking of test‐set II, the CNN was significantly more accurate than nonexperts (13.8% difference [95% confidence interval 3.2–23.6], P = 0.01) with no significant difference with experts. CONCLUSIONS: A single CNN can differentiate adenomas from SSLs and hyperplastic polyps in both NBI and NBI‐NF. A publicly accessible NBI polyp video database was created and benchmarked. John Wiley and Sons Inc. 2023-01-18 2023-07 /pmc/articles/PMC10570984/ /pubmed/36527309 http://dx.doi.org/10.1111/den.14500 Text en © 2023 The Authors. Digestive Endoscopy published by John Wiley & Sons Australia, Ltd on behalf of Japan Gastroenterological Endoscopy Society. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Kader, Rawen
Cid‐Mejias, Anton
Brandao, Patrick
Islam, Shahraz
Hebbar, Sanjith
Puyal, Juana González‐Bueno
Ahmad, Omer F.
Hussein, Mohamed
Toth, Daniel
Mountney, Peter
Seward, Ed
Vega, Roser
Stoyanov, Danail
Lovat, Laurence B.
Polyp characterization using deep learning and a publicly accessible polyp video database
title Polyp characterization using deep learning and a publicly accessible polyp video database
title_full Polyp characterization using deep learning and a publicly accessible polyp video database
title_fullStr Polyp characterization using deep learning and a publicly accessible polyp video database
title_full_unstemmed Polyp characterization using deep learning and a publicly accessible polyp video database
title_short Polyp characterization using deep learning and a publicly accessible polyp video database
title_sort polyp characterization using deep learning and a publicly accessible polyp video database
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10570984/
https://www.ncbi.nlm.nih.gov/pubmed/36527309
http://dx.doi.org/10.1111/den.14500
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