Cargando…

SAFoldNet: A Novel Tool for Discovering and Aligning Three-Dimensional Protein Structures Based on a Neural Network

The development and improvement of methods for comparing and searching for three-dimensional protein structures remain urgent tasks in modern structural biology. To solve this problem, we developed a new tool, SAFoldNet, which allows for searching, aligning, superimposing, and determining the exact...

Descripción completa

Detalles Bibliográficos
Autores principales:	Petrovskiy, Denis V., Nikolsky, Kirill S., Rudnev, Vladimir R., Kulikova, Liudmila I., Butkova, Tatiana V., Malsagova, Kristina A., Kopylov, Arthur T., Kaysheva, Anna L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10572457/ https://www.ncbi.nlm.nih.gov/pubmed/37833886 http://dx.doi.org/10.3390/ijms241914439

Ejemplares similares

Modeling Side Chains in the Three-Dimensional Structure of Proteins for Post-Translational Modifications
por: Petrovskiy, Denis V., et al.
Publicado: (2023)

Analysis of Structural Changes in the Protein near the Phosphorylation Site
por: Nikolsky, Kirill S., et al.
Publicado: (2023)

Current Approaches in Supersecondary Structures Investigation
por: Rudnev, Vladimir R., et al.
Publicado: (2021)

PSSNet—An Accurate Super-Secondary Structure for Protein Segmentation
por: Petrovsky, Denis V., et al.
Publicado: (2022)

Atomic Simulation of the Binding of JAK1 and JAK2 with the Selective Inhibitor Ruxolitinib
por: Kondratyev, Maxim, et al.
Publicado: (2022)

In Silico Study of the Interactions of Anle138b Isomer, an Inhibitor of Amyloid Aggregation, with Partner Proteins
por: Kondratyev, Maxim S., et al.
Publicado: (2022)

Molecular Dynamics Study of Citrullinated Proteins Associated with the Development of Rheumatoid Arthritis
por: Taldaev, Amir, et al.
Publicado: (2022)

Super Secondary Structures of Proteins with Post-Translational Modifications in Colon Cancer
por: Tikhonov, Dmitry, et al.
Publicado: (2020)

3β-Corner Stability by Comparative Molecular Dynamics Simulations
por: Rudnev, Vladimir R., et al.
Publicado: (2022)

Managing of Unassigned Mass Spectrometric Data by Neural Network for Cancer Phenotypes Classification
por: Petrovsky, Denis V., et al.
Publicado: (2021)

Tracking Health, Performance and Recovery in Athletes Using Machine Learning
por: Petrovsky, Denis V., et al.
Publicado: (2022)

Molecular Portrait of an Athlete
por: Malsagova, Kristina A., et al.
Publicado: (2021)

Molecular Modeling Insights into Upadacitinib Selectivity upon Binding to JAK Protein Family
por: Taldaev, Amir, et al.
Publicado: (2021)

Changes in Protein Structural Motifs upon Post-Translational Modification in Kidney Cancer
por: Tikhonov, Dmitry, et al.
Publicado: (2021)

Dried Blood Spot in Laboratory: Directions and Prospects
por: Malsagova, Kristina, et al.
Publicado: (2020)

Proteomic and molecular dynamic investigations of PTM-induced structural fluctuations in breast and ovarian cancer
por: Tikhonov, Dmitry, et al.
Publicado: (2021)

Biobanks—A Platform for Scientific and Biomedical Research
por: Malsagova, Kristina, et al.
Publicado: (2020)

Consolidation of metabolomic, proteomic, and GWAS data in connective model of schizophrenia
por: Kopylov, Arthur T., et al.
Publicado: (2023)

Sports Nutrition: Diets, Selection Factors, Recommendations
por: Malsagova, Kristina A., et al.
Publicado: (2021)

Pharmacogenetic Testing: A Tool for Personalized Drug Therapy Optimization
por: Malsagova, Kristina A., et al.
Publicado: (2020)

Diversity of Plant Sterols Metabolism: The Impact on Human Health, Sport, and Accumulation of Contaminating Sterols
por: Kopylov, Arthur T., et al.
Publicado: (2021)

Determination of Heterogeneous Proteomic and Metabolomic Response in anti-TNF and anti-IL-6 Treatment of Patients with Rheumatoid Arthritis
por: Stepanov, Alexander A., et al.
Publicado: (2023)

Proteome data of serum samples from patients with schizophrenia
por: Butkova, T.V., et al.
Publicado: (2020)

Food Intolerance: The Role of Histamine
por: Shulpekova, Yulia O., et al.
Publicado: (2021)

Molecular Profiling of Athletes Performing High-Intensity Exercises in Extreme Environments
por: Malsagova, Kristina A., et al.
Publicado: (2023)

Tear Proteome Revealed Association of S100A Family Proteins and Mesothelin with Thrombosis in Elderly Patients with Retinal Vein Occlusion
por: Stepanov, Alexander, et al.
Publicado: (2022)

Revelation of Proteomic Indicators for Colorectal Cancer in Initial Stages of Development
por: Kopylov, Arthur T., et al.
Publicado: (2020)

Chromatomass-Spectrometric Method for the Quantitative Determination of Amino- and Carboxylic Acids in Biological Samples
por: Kaysheva, Anna L., et al.
Publicado: (2022)

Pilot data of serum proteins from children with autism spectrum disorders
por: Kaysheva, Anna L., et al.
Publicado: (2019)

Mass Spectrometric Identification of Proteins Enhanced by the Atomic Force Microscopy Immobilization Surface
por: Kaysheva, Anna L., et al.
Publicado: (2021)

Influence of Sports Training in Foothills on the Professional Athlete’s Immunity
por: Malsagova, Kristina A., et al.
Publicado: (2023)

Highly sensitive protein detection by biospecific AFM‐based fishing with pulsed electrical stimulation
por: Pleshakova, Tatyana O., et al.
Publicado: (2017)

Next-Generation Techniques for Discovering Human Monoclonal Antibodies
por: Lushova, A. A., et al.
Publicado: (2017)

Association of Proteins Modulating Immune Response and Insulin Clearance during Gestation with Antenatal Complications in Patients with Gestational or Type 2 Diabetes Mellitus
por: Kopylov, Arthur T., et al.
Publicado: (2020)

Molecular pathophysiology of diabetes mellitus during pregnancy with antenatal complications
por: Kopylov, Arthur T., et al.
Publicado: (2020)

Molecular and Cellular Mechanisms of Respiratory Syncytial Viral Infection: Using Murine Models to Understand Human Pathology
por: Shilovskiy, Igor P., et al.
Publicado: (2021)

The Concept of Folic Acid in Health and Disease
por: Shulpekova, Yulia, et al.
Publicado: (2021)

Net2Align: An Algorithm For Pairwise Global Alignment of Biological Networks
por: Narad, Priyanka, et al.
Publicado: (2016)

Effect of Radiation Therapy on Composition of Lymphocyte Populations in Patients with Primary Breast Cancer
por: Kobzeva, Irina, et al.
Publicado: (2023)

NetAligner—a network alignment server to compare complexes, pathways and whole interactomes
por: Pache, Roland A., et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_mmnc3esjdu4eh9ja16ueqbub1i