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Automatic Identification of Glomerular in Whole-Slide Images Using a Modified UNet Model
Glomeruli are interconnected capillaries in the renal cortex that are responsible for blood filtration. Damage to these glomeruli often signifies the presence of kidney disorders like glomerulonephritis and glomerulosclerosis, which can ultimately lead to chronic kidney disease and kidney failure. T...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10572820/ https://www.ncbi.nlm.nih.gov/pubmed/37835895 http://dx.doi.org/10.3390/diagnostics13193152 |
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author | Kaur, Gurjinder Garg, Meenu Gupta, Sheifali Juneja, Sapna Rashid, Junaid Gupta, Deepali Shah, Asadullah Shaikh, Asadullah |
author_facet | Kaur, Gurjinder Garg, Meenu Gupta, Sheifali Juneja, Sapna Rashid, Junaid Gupta, Deepali Shah, Asadullah Shaikh, Asadullah |
author_sort | Kaur, Gurjinder |
collection | PubMed |
description | Glomeruli are interconnected capillaries in the renal cortex that are responsible for blood filtration. Damage to these glomeruli often signifies the presence of kidney disorders like glomerulonephritis and glomerulosclerosis, which can ultimately lead to chronic kidney disease and kidney failure. The timely detection of such conditions is essential for effective treatment. This paper proposes a modified UNet model to accurately detect glomeruli in whole-slide images of kidney tissue. The UNet model was modified by changing the number of filters and feature map dimensions from the first to the last layer to enhance the model’s capacity for feature extraction. Moreover, the depth of the UNet model was also improved by adding one more convolution block to both the encoder and decoder sections. The dataset used in the study comprised 20 large whole-side images. Due to their large size, the images were cropped into 512 × 512-pixel patches, resulting in a dataset comprising 50,486 images. The proposed model performed well, with 95.7% accuracy, 97.2% precision, 96.4% recall, and 96.7% F1-score. These results demonstrate the proposed model’s superior performance compared to the original UNet model, the UNet model with EfficientNetb3, and the current state-of-the-art. Based on these experimental findings, it has been determined that the proposed model accurately identifies glomeruli in extracted kidney patches. |
format | Online Article Text |
id | pubmed-10572820 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-105728202023-10-14 Automatic Identification of Glomerular in Whole-Slide Images Using a Modified UNet Model Kaur, Gurjinder Garg, Meenu Gupta, Sheifali Juneja, Sapna Rashid, Junaid Gupta, Deepali Shah, Asadullah Shaikh, Asadullah Diagnostics (Basel) Article Glomeruli are interconnected capillaries in the renal cortex that are responsible for blood filtration. Damage to these glomeruli often signifies the presence of kidney disorders like glomerulonephritis and glomerulosclerosis, which can ultimately lead to chronic kidney disease and kidney failure. The timely detection of such conditions is essential for effective treatment. This paper proposes a modified UNet model to accurately detect glomeruli in whole-slide images of kidney tissue. The UNet model was modified by changing the number of filters and feature map dimensions from the first to the last layer to enhance the model’s capacity for feature extraction. Moreover, the depth of the UNet model was also improved by adding one more convolution block to both the encoder and decoder sections. The dataset used in the study comprised 20 large whole-side images. Due to their large size, the images were cropped into 512 × 512-pixel patches, resulting in a dataset comprising 50,486 images. The proposed model performed well, with 95.7% accuracy, 97.2% precision, 96.4% recall, and 96.7% F1-score. These results demonstrate the proposed model’s superior performance compared to the original UNet model, the UNet model with EfficientNetb3, and the current state-of-the-art. Based on these experimental findings, it has been determined that the proposed model accurately identifies glomeruli in extracted kidney patches. MDPI 2023-10-09 /pmc/articles/PMC10572820/ /pubmed/37835895 http://dx.doi.org/10.3390/diagnostics13193152 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kaur, Gurjinder Garg, Meenu Gupta, Sheifali Juneja, Sapna Rashid, Junaid Gupta, Deepali Shah, Asadullah Shaikh, Asadullah Automatic Identification of Glomerular in Whole-Slide Images Using a Modified UNet Model |
title | Automatic Identification of Glomerular in Whole-Slide Images Using a Modified UNet Model |
title_full | Automatic Identification of Glomerular in Whole-Slide Images Using a Modified UNet Model |
title_fullStr | Automatic Identification of Glomerular in Whole-Slide Images Using a Modified UNet Model |
title_full_unstemmed | Automatic Identification of Glomerular in Whole-Slide Images Using a Modified UNet Model |
title_short | Automatic Identification of Glomerular in Whole-Slide Images Using a Modified UNet Model |
title_sort | automatic identification of glomerular in whole-slide images using a modified unet model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10572820/ https://www.ncbi.nlm.nih.gov/pubmed/37835895 http://dx.doi.org/10.3390/diagnostics13193152 |
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