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On the Efficiency of the Density Functional Theory (DFT)-Based Computational Protocol for (1)H and (13)C Nuclear Magnetic Resonance (NMR) Chemical Shifts of Natural Products: Studying the Accuracy of the pecS-n (n = 1, 2) Basis Sets
The basis set issue has always been one of the most important factors of accuracy in the quantum chemical calculations of NMR chemical shifts. In a previous paper, we developed new pecS-n (n = 1, 2) basis sets purposed for the calculations of the NMR chemical shifts of the nuclei of the most popular...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10572908/ https://www.ncbi.nlm.nih.gov/pubmed/37834068 http://dx.doi.org/10.3390/ijms241914623 |
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author | Rusakov, Yuriy Yu. Semenov, Valentin A. Rusakova, Irina L. |
author_facet | Rusakov, Yuriy Yu. Semenov, Valentin A. Rusakova, Irina L. |
author_sort | Rusakov, Yuriy Yu. |
collection | PubMed |
description | The basis set issue has always been one of the most important factors of accuracy in the quantum chemical calculations of NMR chemical shifts. In a previous paper, we developed new pecS-n (n = 1, 2) basis sets purposed for the calculations of the NMR chemical shifts of the nuclei of the most popular NMR-active isotopes of 1–2 row elements and successfully approbated these on the DFT calculations of chemical shifts in a limited series of small molecules. In this paper, we demonstrate the performance of the pecS-n (n = 1, 2) basis sets on the calculations of as much as 713 (1)H and 767 (13)C chemical shifts of 23 biologically active natural products with complicated stereochemical structures, carried out using the GIAO-DFT(PBE0) approach. We also proposed new alternative contraction schemes for our basis sets characterized by less contraction depth of the p-shell. New contraction coefficients have been optimized with the property-energy consistent (PEC) method. The accuracies of the pecS-n (n = 1, 2) basis sets of both the original and newly contracted forms were assessed on massive benchmark calculations of proton and carbon chemical shifts of a vast variety of natural products. It was found that less contracted pecS-n (n = 1, 2) basis sets provide no noticeable improvement in accuracy. These calculations represent the most austere test of our basis sets as applied to routine calculations of the NMR chemical shifts of real-life compounds. |
format | Online Article Text |
id | pubmed-10572908 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-105729082023-10-14 On the Efficiency of the Density Functional Theory (DFT)-Based Computational Protocol for (1)H and (13)C Nuclear Magnetic Resonance (NMR) Chemical Shifts of Natural Products: Studying the Accuracy of the pecS-n (n = 1, 2) Basis Sets Rusakov, Yuriy Yu. Semenov, Valentin A. Rusakova, Irina L. Int J Mol Sci Article The basis set issue has always been one of the most important factors of accuracy in the quantum chemical calculations of NMR chemical shifts. In a previous paper, we developed new pecS-n (n = 1, 2) basis sets purposed for the calculations of the NMR chemical shifts of the nuclei of the most popular NMR-active isotopes of 1–2 row elements and successfully approbated these on the DFT calculations of chemical shifts in a limited series of small molecules. In this paper, we demonstrate the performance of the pecS-n (n = 1, 2) basis sets on the calculations of as much as 713 (1)H and 767 (13)C chemical shifts of 23 biologically active natural products with complicated stereochemical structures, carried out using the GIAO-DFT(PBE0) approach. We also proposed new alternative contraction schemes for our basis sets characterized by less contraction depth of the p-shell. New contraction coefficients have been optimized with the property-energy consistent (PEC) method. The accuracies of the pecS-n (n = 1, 2) basis sets of both the original and newly contracted forms were assessed on massive benchmark calculations of proton and carbon chemical shifts of a vast variety of natural products. It was found that less contracted pecS-n (n = 1, 2) basis sets provide no noticeable improvement in accuracy. These calculations represent the most austere test of our basis sets as applied to routine calculations of the NMR chemical shifts of real-life compounds. MDPI 2023-09-27 /pmc/articles/PMC10572908/ /pubmed/37834068 http://dx.doi.org/10.3390/ijms241914623 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Rusakov, Yuriy Yu. Semenov, Valentin A. Rusakova, Irina L. On the Efficiency of the Density Functional Theory (DFT)-Based Computational Protocol for (1)H and (13)C Nuclear Magnetic Resonance (NMR) Chemical Shifts of Natural Products: Studying the Accuracy of the pecS-n (n = 1, 2) Basis Sets |
title | On the Efficiency of the Density Functional Theory (DFT)-Based Computational Protocol for (1)H and (13)C Nuclear Magnetic Resonance (NMR) Chemical Shifts of Natural Products: Studying the Accuracy of the pecS-n (n = 1, 2) Basis Sets |
title_full | On the Efficiency of the Density Functional Theory (DFT)-Based Computational Protocol for (1)H and (13)C Nuclear Magnetic Resonance (NMR) Chemical Shifts of Natural Products: Studying the Accuracy of the pecS-n (n = 1, 2) Basis Sets |
title_fullStr | On the Efficiency of the Density Functional Theory (DFT)-Based Computational Protocol for (1)H and (13)C Nuclear Magnetic Resonance (NMR) Chemical Shifts of Natural Products: Studying the Accuracy of the pecS-n (n = 1, 2) Basis Sets |
title_full_unstemmed | On the Efficiency of the Density Functional Theory (DFT)-Based Computational Protocol for (1)H and (13)C Nuclear Magnetic Resonance (NMR) Chemical Shifts of Natural Products: Studying the Accuracy of the pecS-n (n = 1, 2) Basis Sets |
title_short | On the Efficiency of the Density Functional Theory (DFT)-Based Computational Protocol for (1)H and (13)C Nuclear Magnetic Resonance (NMR) Chemical Shifts of Natural Products: Studying the Accuracy of the pecS-n (n = 1, 2) Basis Sets |
title_sort | on the efficiency of the density functional theory (dft)-based computational protocol for (1)h and (13)c nuclear magnetic resonance (nmr) chemical shifts of natural products: studying the accuracy of the pecs-n (n = 1, 2) basis sets |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10572908/ https://www.ncbi.nlm.nih.gov/pubmed/37834068 http://dx.doi.org/10.3390/ijms241914623 |
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