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Robust AMBER Force Field Parameters for Glutathionylated Cysteines
S-glutathionylation is an oxidative post-translational modification, which is involved in the regulation of many cell signaling pathways. Increasing amounts of studies show that it is crucial in cell homeostasis and deregulated in several pathologies. However, the effect of S-glutathionylation on pr...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10573104/ https://www.ncbi.nlm.nih.gov/pubmed/37834470 http://dx.doi.org/10.3390/ijms241915022 |
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author | Elftmaoui, Zineb Bignon, Emmanuelle |
author_facet | Elftmaoui, Zineb Bignon, Emmanuelle |
author_sort | Elftmaoui, Zineb |
collection | PubMed |
description | S-glutathionylation is an oxidative post-translational modification, which is involved in the regulation of many cell signaling pathways. Increasing amounts of studies show that it is crucial in cell homeostasis and deregulated in several pathologies. However, the effect of S-glutathionylation on proteins’ structure and activity is poorly understood, and a drastic lack of structural information at the atomic scale remains. Studies based on the use of molecular dynamics simulations, which can provide important information about modification-induced modulation of proteins’ structure and function, are also sparse, and there is no benchmarked force field parameters for this modified cysteine. In this contribution, we provide robust AMBER parameters for S-glutathionylation, which we tested extensively against experimental data through a total of 33 [Formula: see text] s molecular dynamics simulations. We show that our parameter set efficiently describes the global and local structural properties of S-glutathionylated proteins. These data provide the community with an important tool to foster new investigations into the effect of S-glutathionylation on protein dynamics and function, in a common effort to unravel the structural mechanisms underlying its critical role in cellular processes. |
format | Online Article Text |
id | pubmed-10573104 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-105731042023-10-14 Robust AMBER Force Field Parameters for Glutathionylated Cysteines Elftmaoui, Zineb Bignon, Emmanuelle Int J Mol Sci Article S-glutathionylation is an oxidative post-translational modification, which is involved in the regulation of many cell signaling pathways. Increasing amounts of studies show that it is crucial in cell homeostasis and deregulated in several pathologies. However, the effect of S-glutathionylation on proteins’ structure and activity is poorly understood, and a drastic lack of structural information at the atomic scale remains. Studies based on the use of molecular dynamics simulations, which can provide important information about modification-induced modulation of proteins’ structure and function, are also sparse, and there is no benchmarked force field parameters for this modified cysteine. In this contribution, we provide robust AMBER parameters for S-glutathionylation, which we tested extensively against experimental data through a total of 33 [Formula: see text] s molecular dynamics simulations. We show that our parameter set efficiently describes the global and local structural properties of S-glutathionylated proteins. These data provide the community with an important tool to foster new investigations into the effect of S-glutathionylation on protein dynamics and function, in a common effort to unravel the structural mechanisms underlying its critical role in cellular processes. MDPI 2023-10-09 /pmc/articles/PMC10573104/ /pubmed/37834470 http://dx.doi.org/10.3390/ijms241915022 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Elftmaoui, Zineb Bignon, Emmanuelle Robust AMBER Force Field Parameters for Glutathionylated Cysteines |
title | Robust AMBER Force Field Parameters for Glutathionylated Cysteines |
title_full | Robust AMBER Force Field Parameters for Glutathionylated Cysteines |
title_fullStr | Robust AMBER Force Field Parameters for Glutathionylated Cysteines |
title_full_unstemmed | Robust AMBER Force Field Parameters for Glutathionylated Cysteines |
title_short | Robust AMBER Force Field Parameters for Glutathionylated Cysteines |
title_sort | robust amber force field parameters for glutathionylated cysteines |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10573104/ https://www.ncbi.nlm.nih.gov/pubmed/37834470 http://dx.doi.org/10.3390/ijms241915022 |
work_keys_str_mv | AT elftmaouizineb robustamberforcefieldparametersforglutathionylatedcysteines AT bignonemmanuelle robustamberforcefieldparametersforglutathionylatedcysteines |