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PFKP is a prospective prognostic, diagnostic, immunological and drug sensitivity predictor across pan-cancer
Phosphofructokinase, platelet (PFKP) is a rate-limiting enzyme of glycolysis that plays a decisive role in various human physio-pathological processes. PFKP has been reported to have multiple functions in different cancer types, including lung cancer and breast cancer. However, no systematic pancanc...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10576092/ https://www.ncbi.nlm.nih.gov/pubmed/37833332 http://dx.doi.org/10.1038/s41598-023-43982-2 |
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author | Peng, Jian Li, Pingping Li, Yuan Quan, Jichuan Yao, Yanwei Duan, Junfang Liu, Xuemei Li, Hao Yuan, Dajiang Wang, Xiaoru |
author_facet | Peng, Jian Li, Pingping Li, Yuan Quan, Jichuan Yao, Yanwei Duan, Junfang Liu, Xuemei Li, Hao Yuan, Dajiang Wang, Xiaoru |
author_sort | Peng, Jian |
collection | PubMed |
description | Phosphofructokinase, platelet (PFKP) is a rate-limiting enzyme of glycolysis that plays a decisive role in various human physio-pathological processes. PFKP has been reported to have multiple functions in different cancer types, including lung cancer and breast cancer. However, no systematic pancancer analysis of PFKP has been performed; this type of analysis could elucidate the clinical value of PFKP in terms of diagnosis, prognosis, drug sensitivity, and immunological correlation. Systematic bioinformation analysis of PFKP was performed based on several public datasets, including The Cancer Genome Atlas (TCGA), Cancer Cell Line Encyclopedia (CCLE), Genotype-Tissue Expression Project (GTEx), and Human Protein Atlas (HPA). Prospective carcinogenesis of PFKP across cancers was estimated by expression analysis, effect on patient prognosis, diagnosis significance evaluation, and immunity regulation estimation. Then, pancancer functional enrichment of PFKP was also assessed through its effect on the signaling score and gene expression profile. Finally, upstream expression regulation of PFKP was explored by promoter DNA methylation and transcription factor (TF) prediction. Our analysis revealed that high expression of PFKP was found in most cancer types. Additionally, a high level of PFKP displayed a significant correlation with poor prognosis in patients across cancers. The diagnostic value of PFKP was performed based on its positive correlation with programmed cell death-ligand 1 (PD-L1). We also found an obvious immune-regulating effect of PFKP in most cancer types. PFKP also had a strong negative correlation with several cancer drugs. Finally, ectopic expression of PFKP may depend on DNA methylation and several predicated transcription factors, including the KLF (KLF transcription factor) and Sp (Sp transcription factor) families. This pancancer analysis revealed that a high expression level of PFKP might be a useful biomarker and predictor in most cancer types. Additionally, the performance of PFKP across cancers also suggested its meaningful role in cancer immunity regulation, even in immunotherapy and drug resistance. Overall, PFKP might be explored as an auxiliary monitor for pancancer early prognosis and diagnosis. |
format | Online Article Text |
id | pubmed-10576092 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-105760922023-10-15 PFKP is a prospective prognostic, diagnostic, immunological and drug sensitivity predictor across pan-cancer Peng, Jian Li, Pingping Li, Yuan Quan, Jichuan Yao, Yanwei Duan, Junfang Liu, Xuemei Li, Hao Yuan, Dajiang Wang, Xiaoru Sci Rep Article Phosphofructokinase, platelet (PFKP) is a rate-limiting enzyme of glycolysis that plays a decisive role in various human physio-pathological processes. PFKP has been reported to have multiple functions in different cancer types, including lung cancer and breast cancer. However, no systematic pancancer analysis of PFKP has been performed; this type of analysis could elucidate the clinical value of PFKP in terms of diagnosis, prognosis, drug sensitivity, and immunological correlation. Systematic bioinformation analysis of PFKP was performed based on several public datasets, including The Cancer Genome Atlas (TCGA), Cancer Cell Line Encyclopedia (CCLE), Genotype-Tissue Expression Project (GTEx), and Human Protein Atlas (HPA). Prospective carcinogenesis of PFKP across cancers was estimated by expression analysis, effect on patient prognosis, diagnosis significance evaluation, and immunity regulation estimation. Then, pancancer functional enrichment of PFKP was also assessed through its effect on the signaling score and gene expression profile. Finally, upstream expression regulation of PFKP was explored by promoter DNA methylation and transcription factor (TF) prediction. Our analysis revealed that high expression of PFKP was found in most cancer types. Additionally, a high level of PFKP displayed a significant correlation with poor prognosis in patients across cancers. The diagnostic value of PFKP was performed based on its positive correlation with programmed cell death-ligand 1 (PD-L1). We also found an obvious immune-regulating effect of PFKP in most cancer types. PFKP also had a strong negative correlation with several cancer drugs. Finally, ectopic expression of PFKP may depend on DNA methylation and several predicated transcription factors, including the KLF (KLF transcription factor) and Sp (Sp transcription factor) families. This pancancer analysis revealed that a high expression level of PFKP might be a useful biomarker and predictor in most cancer types. Additionally, the performance of PFKP across cancers also suggested its meaningful role in cancer immunity regulation, even in immunotherapy and drug resistance. Overall, PFKP might be explored as an auxiliary monitor for pancancer early prognosis and diagnosis. Nature Publishing Group UK 2023-10-13 /pmc/articles/PMC10576092/ /pubmed/37833332 http://dx.doi.org/10.1038/s41598-023-43982-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Peng, Jian Li, Pingping Li, Yuan Quan, Jichuan Yao, Yanwei Duan, Junfang Liu, Xuemei Li, Hao Yuan, Dajiang Wang, Xiaoru PFKP is a prospective prognostic, diagnostic, immunological and drug sensitivity predictor across pan-cancer |
title | PFKP is a prospective prognostic, diagnostic, immunological and drug sensitivity predictor across pan-cancer |
title_full | PFKP is a prospective prognostic, diagnostic, immunological and drug sensitivity predictor across pan-cancer |
title_fullStr | PFKP is a prospective prognostic, diagnostic, immunological and drug sensitivity predictor across pan-cancer |
title_full_unstemmed | PFKP is a prospective prognostic, diagnostic, immunological and drug sensitivity predictor across pan-cancer |
title_short | PFKP is a prospective prognostic, diagnostic, immunological and drug sensitivity predictor across pan-cancer |
title_sort | pfkp is a prospective prognostic, diagnostic, immunological and drug sensitivity predictor across pan-cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10576092/ https://www.ncbi.nlm.nih.gov/pubmed/37833332 http://dx.doi.org/10.1038/s41598-023-43982-2 |
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