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Aliro: an automated machine learning tool leveraging large language models

MOTIVATION: Biomedical and healthcare domains generate vast amounts of complex data that can be challenging to analyze using machine learning tools, especially for researchers without computer science training. RESULTS: Aliro is an open-source software package designed to automate machine learning a...

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Detalles Bibliográficos
Autores principales: Choi, Hyunjun, Moran, Jay, Matsumoto, Nicholas, Hernandez, Miguel E, Moore, Jason H
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10576163/
https://www.ncbi.nlm.nih.gov/pubmed/37796839
http://dx.doi.org/10.1093/bioinformatics/btad606
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author Choi, Hyunjun
Moran, Jay
Matsumoto, Nicholas
Hernandez, Miguel E
Moore, Jason H
author_facet Choi, Hyunjun
Moran, Jay
Matsumoto, Nicholas
Hernandez, Miguel E
Moore, Jason H
author_sort Choi, Hyunjun
collection PubMed
description MOTIVATION: Biomedical and healthcare domains generate vast amounts of complex data that can be challenging to analyze using machine learning tools, especially for researchers without computer science training. RESULTS: Aliro is an open-source software package designed to automate machine learning analysis through a clean web interface. By infusing the power of large language models, the user can interact with their data by seamlessly retrieving and executing code pulled from the large language model, accelerating automated discovery of new insights from data. Aliro includes a pre-trained machine learning recommendation system that can assist the user to automate the selection of machine learning algorithms and its hyperparameters and provides visualization of the evaluated model and data. AVAILABILITY AND IMPLEMENTATION: Aliro is deployed by running its custom Docker containers. Aliro is available as open-source from GitHub at: https://github.com/EpistasisLab/Aliro.
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spelling pubmed-105761632023-10-15 Aliro: an automated machine learning tool leveraging large language models Choi, Hyunjun Moran, Jay Matsumoto, Nicholas Hernandez, Miguel E Moore, Jason H Bioinformatics Applications Note MOTIVATION: Biomedical and healthcare domains generate vast amounts of complex data that can be challenging to analyze using machine learning tools, especially for researchers without computer science training. RESULTS: Aliro is an open-source software package designed to automate machine learning analysis through a clean web interface. By infusing the power of large language models, the user can interact with their data by seamlessly retrieving and executing code pulled from the large language model, accelerating automated discovery of new insights from data. Aliro includes a pre-trained machine learning recommendation system that can assist the user to automate the selection of machine learning algorithms and its hyperparameters and provides visualization of the evaluated model and data. AVAILABILITY AND IMPLEMENTATION: Aliro is deployed by running its custom Docker containers. Aliro is available as open-source from GitHub at: https://github.com/EpistasisLab/Aliro. Oxford University Press 2023-10-05 /pmc/articles/PMC10576163/ /pubmed/37796839 http://dx.doi.org/10.1093/bioinformatics/btad606 Text en © The Author(s) 2023. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Choi, Hyunjun
Moran, Jay
Matsumoto, Nicholas
Hernandez, Miguel E
Moore, Jason H
Aliro: an automated machine learning tool leveraging large language models
title Aliro: an automated machine learning tool leveraging large language models
title_full Aliro: an automated machine learning tool leveraging large language models
title_fullStr Aliro: an automated machine learning tool leveraging large language models
title_full_unstemmed Aliro: an automated machine learning tool leveraging large language models
title_short Aliro: an automated machine learning tool leveraging large language models
title_sort aliro: an automated machine learning tool leveraging large language models
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10576163/
https://www.ncbi.nlm.nih.gov/pubmed/37796839
http://dx.doi.org/10.1093/bioinformatics/btad606
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AT hernandezmiguele aliroanautomatedmachinelearningtoolleveraginglargelanguagemodels
AT moorejasonh aliroanautomatedmachinelearningtoolleveraginglargelanguagemodels