Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974)

The first completed, circular mitochondrial genome and the first draft, linear chloroplastic genome of the blue diatom Haslea ostrearia (Simonsen 1974, Naviculaceae, Bacillariophyceae) were assembled from Illumina and PacBio sequencing. The mitochondrial genome was composed of 38,696 bases and conta...

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Autores principales: Peticca, Aurelie, Fodil, Mostefa, Gateau, Helene, Mouget, Jean-Luc, Sabot, Francois, Chenais, Benoit, Casse, Nathalie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Rapid Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10578087/
https://www.ncbi.nlm.nih.gov/pubmed/37849652
http://dx.doi.org/10.1080/23802359.2023.2268747
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author Peticca, Aurelie
Fodil, Mostefa
Gateau, Helene
Mouget, Jean-Luc
Sabot, Francois
Chenais, Benoit
Casse, Nathalie
author_facet Peticca, Aurelie
Fodil, Mostefa
Gateau, Helene
Mouget, Jean-Luc
Sabot, Francois
Chenais, Benoit
Casse, Nathalie
author_sort Peticca, Aurelie
collection PubMed
description The first completed, circular mitochondrial genome and the first draft, linear chloroplastic genome of the blue diatom Haslea ostrearia (Simonsen 1974, Naviculaceae, Bacillariophyceae) were assembled from Illumina and PacBio sequencing. The mitochondrial genome was composed of 38,696 bases and contained 64 genes, including 31 protein-coding genes (CDS), 2 ribosomal RNA (rRNA) genes and 23 transfer RNA (tRNA) genes. For the chloroplast, the genome was composed of 130,200 bases with 169 genes (131 CDS, 6 rRNA genes, 31 tRNA genes, and 1 transfer messenger RNA gene). Phylogenetic trees, using the maximum-likehood method and partial genes currently available for Haslea ostrearia and other diatom species, suggested the proximity of all the Haslea ostrearia strains/isolates and the possibility of using these genomes as future references.
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spelling pubmed-105780872023-10-17 Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974) Peticca, Aurelie Fodil, Mostefa Gateau, Helene Mouget, Jean-Luc Sabot, Francois Chenais, Benoit Casse, Nathalie Mitochondrial DNA B Resour Rapid Communication The first completed, circular mitochondrial genome and the first draft, linear chloroplastic genome of the blue diatom Haslea ostrearia (Simonsen 1974, Naviculaceae, Bacillariophyceae) were assembled from Illumina and PacBio sequencing. The mitochondrial genome was composed of 38,696 bases and contained 64 genes, including 31 protein-coding genes (CDS), 2 ribosomal RNA (rRNA) genes and 23 transfer RNA (tRNA) genes. For the chloroplast, the genome was composed of 130,200 bases with 169 genes (131 CDS, 6 rRNA genes, 31 tRNA genes, and 1 transfer messenger RNA gene). Phylogenetic trees, using the maximum-likehood method and partial genes currently available for Haslea ostrearia and other diatom species, suggested the proximity of all the Haslea ostrearia strains/isolates and the possibility of using these genomes as future references. Taylor & Francis 2023-10-13 /pmc/articles/PMC10578087/ /pubmed/37849652 http://dx.doi.org/10.1080/23802359.2023.2268747 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Rapid Communication
Peticca, Aurelie
Fodil, Mostefa
Gateau, Helene
Mouget, Jean-Luc
Sabot, Francois
Chenais, Benoit
Casse, Nathalie
Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974)
title Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974)
title_full Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974)
title_fullStr Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974)
title_full_unstemmed Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974)
title_short Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974)
title_sort complete mitochondrial genome and draft chloroplastic genome of haslea ostrearia (simonsen 1974)
topic Rapid Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10578087/
https://www.ncbi.nlm.nih.gov/pubmed/37849652
http://dx.doi.org/10.1080/23802359.2023.2268747
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