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Iron insertion into coproporphyrin III‐ferrochelatase complex: Evidence for an intermediate distorted catalytic species

Understanding the reaction mechanism of enzymes at the molecular level is generally a difficult task, since many parameters affect the turnover. Often, due to high reactivity and formation of transient species or intermediates, detailed information on enzymatic catalysis is obtained by means of mode...

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Autores principales: Gabler, Thomas, Dali, Andrea, Sebastiani, Federico, Furtmüller, Paul Georg, Becucci, Maurizio, Hofbauer, Stefan, Smulevich, Giulietta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10578119/
https://www.ncbi.nlm.nih.gov/pubmed/37743577
http://dx.doi.org/10.1002/pro.4788
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author Gabler, Thomas
Dali, Andrea
Sebastiani, Federico
Furtmüller, Paul Georg
Becucci, Maurizio
Hofbauer, Stefan
Smulevich, Giulietta
author_facet Gabler, Thomas
Dali, Andrea
Sebastiani, Federico
Furtmüller, Paul Georg
Becucci, Maurizio
Hofbauer, Stefan
Smulevich, Giulietta
author_sort Gabler, Thomas
collection PubMed
description Understanding the reaction mechanism of enzymes at the molecular level is generally a difficult task, since many parameters affect the turnover. Often, due to high reactivity and formation of transient species or intermediates, detailed information on enzymatic catalysis is obtained by means of model substrates. Whenever possible, it is essential to confirm a reaction mechanism based on substrate analogues or model systems by using the physiological substrates. Here we disclose the ferrous iron incorporation mechanism, in solution, and in crystallo, by the coproporphyrin III‐coproporphyrin ferrochelatase complex from the firmicute, pathogen, and antibiotic resistant, Listeria monocytogenes. Coproporphyrin ferrochelatase plays an important physiological role as the metalation represents the penultimate reaction step in the prokaryotic coproporphyrin‐dependent heme biosynthetic pathway, yielding coproheme (ferric coproporphyrin III). By following the metal titration with resonance Raman spectroscopy and x‐ray crystallography, we prove that upon metalation the saddling distortion becomes predominant both in the crystal and in solution. This is a consequence of the readjustment of hydrogen bond interactions of the propionates with the protein scaffold during the enzymatic catalysis. Once the propionates have established the interactions typical of the coproheme complex, the distortion slowly decreases, to reach the almost planar final product.
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spelling pubmed-105781192023-11-01 Iron insertion into coproporphyrin III‐ferrochelatase complex: Evidence for an intermediate distorted catalytic species Gabler, Thomas Dali, Andrea Sebastiani, Federico Furtmüller, Paul Georg Becucci, Maurizio Hofbauer, Stefan Smulevich, Giulietta Protein Sci Research Articles Understanding the reaction mechanism of enzymes at the molecular level is generally a difficult task, since many parameters affect the turnover. Often, due to high reactivity and formation of transient species or intermediates, detailed information on enzymatic catalysis is obtained by means of model substrates. Whenever possible, it is essential to confirm a reaction mechanism based on substrate analogues or model systems by using the physiological substrates. Here we disclose the ferrous iron incorporation mechanism, in solution, and in crystallo, by the coproporphyrin III‐coproporphyrin ferrochelatase complex from the firmicute, pathogen, and antibiotic resistant, Listeria monocytogenes. Coproporphyrin ferrochelatase plays an important physiological role as the metalation represents the penultimate reaction step in the prokaryotic coproporphyrin‐dependent heme biosynthetic pathway, yielding coproheme (ferric coproporphyrin III). By following the metal titration with resonance Raman spectroscopy and x‐ray crystallography, we prove that upon metalation the saddling distortion becomes predominant both in the crystal and in solution. This is a consequence of the readjustment of hydrogen bond interactions of the propionates with the protein scaffold during the enzymatic catalysis. Once the propionates have established the interactions typical of the coproheme complex, the distortion slowly decreases, to reach the almost planar final product. John Wiley & Sons, Inc. 2023-11-01 /pmc/articles/PMC10578119/ /pubmed/37743577 http://dx.doi.org/10.1002/pro.4788 Text en © 2023 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Gabler, Thomas
Dali, Andrea
Sebastiani, Federico
Furtmüller, Paul Georg
Becucci, Maurizio
Hofbauer, Stefan
Smulevich, Giulietta
Iron insertion into coproporphyrin III‐ferrochelatase complex: Evidence for an intermediate distorted catalytic species
title Iron insertion into coproporphyrin III‐ferrochelatase complex: Evidence for an intermediate distorted catalytic species
title_full Iron insertion into coproporphyrin III‐ferrochelatase complex: Evidence for an intermediate distorted catalytic species
title_fullStr Iron insertion into coproporphyrin III‐ferrochelatase complex: Evidence for an intermediate distorted catalytic species
title_full_unstemmed Iron insertion into coproporphyrin III‐ferrochelatase complex: Evidence for an intermediate distorted catalytic species
title_short Iron insertion into coproporphyrin III‐ferrochelatase complex: Evidence for an intermediate distorted catalytic species
title_sort iron insertion into coproporphyrin iii‐ferrochelatase complex: evidence for an intermediate distorted catalytic species
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10578119/
https://www.ncbi.nlm.nih.gov/pubmed/37743577
http://dx.doi.org/10.1002/pro.4788
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