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Clinicopathological and prognostic values of MET expression in pancreatic adenocarcinoma based on bioinformatics analysis
Pancreatic adenocarcinoma (PAAD) is regarded as one of the most lethiferous cancers worldwide because treatment of pancreatic cancer remains challenging and mostly palliative. Little progress had been made to select certain reliable biomarkers as clinical prognosis. In this context, GSE28735 and GSE...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Lippincott Williams & Wilkins
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10578750/ https://www.ncbi.nlm.nih.gov/pubmed/37832054 http://dx.doi.org/10.1097/MD.0000000000034656 |
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author | Yao, Yixing Zhan, Rui Gong, Chanchan Lv, Jiaying Lu, Xialiang |
author_facet | Yao, Yixing Zhan, Rui Gong, Chanchan Lv, Jiaying Lu, Xialiang |
author_sort | Yao, Yixing |
collection | PubMed |
description | Pancreatic adenocarcinoma (PAAD) is regarded as one of the most lethiferous cancers worldwide because treatment of pancreatic cancer remains challenging and mostly palliative. Little progress had been made to select certain reliable biomarkers as clinical prognosis. In this context, GSE28735 and GSE16515 were obtained from the Gene Expression Omnibus (GEO). GEO2R tool was used to recognize differentially expressed genes (DEGs). 351 DEGs were screened which included 230 up-regulated genes and 121 down-regulated genes. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed to analyze the DEGs and associated signal pathways in the DAVID database. A protein–protein interaction (PPI) network was then constructed to screen 10 hub genes by STRING database and Cityscape software. Analyses of 10 hub genes were performed on GEPIA database and GSCA database, which revealed that MET was high expressed and significantly associated with survival of PAAD patients. Immunohistochemical staining showed that MET was higher expressed in PAAD tissues than adjacent tissues in 20 samples. The clinicopathological analysis revealed that high expression of MET was associated with the degree of differentiation, lymph node metastasis, vascular cancer thrombus and nerve invasion in PAAD tissues (P < .05). Furthermore, the Tumor Immune Estimation Resource (TIMER) database analyzed the correlation between the MET expression level and immune infiltration levels, which elucidated that MET expression was appreciably positively correlated with the infiltration levels of myeloid-derived suppressor cells (MDSCs). Here, these results strongly indicate MET is an unique prognostic biomarker. Its expression level is correlated with certain clinicopathological features and immune cell infiltration. |
format | Online Article Text |
id | pubmed-10578750 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-105787502023-10-17 Clinicopathological and prognostic values of MET expression in pancreatic adenocarcinoma based on bioinformatics analysis Yao, Yixing Zhan, Rui Gong, Chanchan Lv, Jiaying Lu, Xialiang Medicine (Baltimore) Observational Study Pancreatic adenocarcinoma (PAAD) is regarded as one of the most lethiferous cancers worldwide because treatment of pancreatic cancer remains challenging and mostly palliative. Little progress had been made to select certain reliable biomarkers as clinical prognosis. In this context, GSE28735 and GSE16515 were obtained from the Gene Expression Omnibus (GEO). GEO2R tool was used to recognize differentially expressed genes (DEGs). 351 DEGs were screened which included 230 up-regulated genes and 121 down-regulated genes. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed to analyze the DEGs and associated signal pathways in the DAVID database. A protein–protein interaction (PPI) network was then constructed to screen 10 hub genes by STRING database and Cityscape software. Analyses of 10 hub genes were performed on GEPIA database and GSCA database, which revealed that MET was high expressed and significantly associated with survival of PAAD patients. Immunohistochemical staining showed that MET was higher expressed in PAAD tissues than adjacent tissues in 20 samples. The clinicopathological analysis revealed that high expression of MET was associated with the degree of differentiation, lymph node metastasis, vascular cancer thrombus and nerve invasion in PAAD tissues (P < .05). Furthermore, the Tumor Immune Estimation Resource (TIMER) database analyzed the correlation between the MET expression level and immune infiltration levels, which elucidated that MET expression was appreciably positively correlated with the infiltration levels of myeloid-derived suppressor cells (MDSCs). Here, these results strongly indicate MET is an unique prognostic biomarker. Its expression level is correlated with certain clinicopathological features and immune cell infiltration. Lippincott Williams & Wilkins 2023-10-13 /pmc/articles/PMC10578750/ /pubmed/37832054 http://dx.doi.org/10.1097/MD.0000000000034656 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal. |
spellingShingle | Observational Study Yao, Yixing Zhan, Rui Gong, Chanchan Lv, Jiaying Lu, Xialiang Clinicopathological and prognostic values of MET expression in pancreatic adenocarcinoma based on bioinformatics analysis |
title | Clinicopathological and prognostic values of MET expression in pancreatic adenocarcinoma based on bioinformatics analysis |
title_full | Clinicopathological and prognostic values of MET expression in pancreatic adenocarcinoma based on bioinformatics analysis |
title_fullStr | Clinicopathological and prognostic values of MET expression in pancreatic adenocarcinoma based on bioinformatics analysis |
title_full_unstemmed | Clinicopathological and prognostic values of MET expression in pancreatic adenocarcinoma based on bioinformatics analysis |
title_short | Clinicopathological and prognostic values of MET expression in pancreatic adenocarcinoma based on bioinformatics analysis |
title_sort | clinicopathological and prognostic values of met expression in pancreatic adenocarcinoma based on bioinformatics analysis |
topic | Observational Study |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10578750/ https://www.ncbi.nlm.nih.gov/pubmed/37832054 http://dx.doi.org/10.1097/MD.0000000000034656 |
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