Cargando…
Easy C. elegans Worm Lifespan Plotting and Statistics with WLSplot
WLSplot is an R package used to easily analyze lifespan survival data, and display results graphically as a survival curve with useful labels and statistical information auto-generated from the data and added to the graph, within a single function. It is designed primarily with Caenorhabditis elegan...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Caltech Library
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10580078/ https://www.ncbi.nlm.nih.gov/pubmed/37854099 http://dx.doi.org/10.17912/micropub.biology.000991 |
_version_ | 1785121870721318912 |
---|---|
author | Mariner, Blaise L Peterson, Jack Taylor, Jackson C Achusim, Alex T McCormick, Mark A |
author_facet | Mariner, Blaise L Peterson, Jack Taylor, Jackson C Achusim, Alex T McCormick, Mark A |
author_sort | Mariner, Blaise L |
collection | PubMed |
description | WLSplot is an R package used to easily analyze lifespan survival data, and display results graphically as a survival curve with useful labels and statistical information auto-generated from the data and added to the graph, within a single function. It is designed primarily with Caenorhabditis elegans lifespan data in mind initially but can easily be used for other types of survival data. The WLSplot GitHub repository provides a blank template spreadsheet to be used for collecting lifespan data, instructions on how to install and run WLSplot, and examples covering RNAi, Genotype, or Drug lifespan experimental set-ups. WLSplot can analyze and plot multiple experiments in bulk while correctly italicizing worm gene names and adding asterisks and p-values to the plot legend when a significantly different lifespan from the designated control lifespan is seen. This is returned as an editable scalable vector graphics (svg) file for each output, and WLSplot can also return the summary of the directly plotted data so that the researcher can do their own further manipulation, in addition to being able to edit the output svg files. |
format | Online Article Text |
id | pubmed-10580078 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Caltech Library |
record_format | MEDLINE/PubMed |
spelling | pubmed-105800782023-10-18 Easy C. elegans Worm Lifespan Plotting and Statistics with WLSplot Mariner, Blaise L Peterson, Jack Taylor, Jackson C Achusim, Alex T McCormick, Mark A MicroPubl Biol Software WLSplot is an R package used to easily analyze lifespan survival data, and display results graphically as a survival curve with useful labels and statistical information auto-generated from the data and added to the graph, within a single function. It is designed primarily with Caenorhabditis elegans lifespan data in mind initially but can easily be used for other types of survival data. The WLSplot GitHub repository provides a blank template spreadsheet to be used for collecting lifespan data, instructions on how to install and run WLSplot, and examples covering RNAi, Genotype, or Drug lifespan experimental set-ups. WLSplot can analyze and plot multiple experiments in bulk while correctly italicizing worm gene names and adding asterisks and p-values to the plot legend when a significantly different lifespan from the designated control lifespan is seen. This is returned as an editable scalable vector graphics (svg) file for each output, and WLSplot can also return the summary of the directly plotted data so that the researcher can do their own further manipulation, in addition to being able to edit the output svg files. Caltech Library 2023-10-02 /pmc/articles/PMC10580078/ /pubmed/37854099 http://dx.doi.org/10.17912/micropub.biology.000991 Text en Copyright: © 2023 by the authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Software Mariner, Blaise L Peterson, Jack Taylor, Jackson C Achusim, Alex T McCormick, Mark A Easy C. elegans Worm Lifespan Plotting and Statistics with WLSplot |
title |
Easy
C. elegans
Worm Lifespan Plotting and Statistics with WLSplot
|
title_full |
Easy
C. elegans
Worm Lifespan Plotting and Statistics with WLSplot
|
title_fullStr |
Easy
C. elegans
Worm Lifespan Plotting and Statistics with WLSplot
|
title_full_unstemmed |
Easy
C. elegans
Worm Lifespan Plotting and Statistics with WLSplot
|
title_short |
Easy
C. elegans
Worm Lifespan Plotting and Statistics with WLSplot
|
title_sort | easy
c. elegans
worm lifespan plotting and statistics with wlsplot |
topic | Software |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10580078/ https://www.ncbi.nlm.nih.gov/pubmed/37854099 http://dx.doi.org/10.17912/micropub.biology.000991 |
work_keys_str_mv | AT marinerblaisel easyceleganswormlifespanplottingandstatisticswithwlsplot AT petersonjack easyceleganswormlifespanplottingandstatisticswithwlsplot AT taylorjacksonc easyceleganswormlifespanplottingandstatisticswithwlsplot AT achusimalext easyceleganswormlifespanplottingandstatisticswithwlsplot AT mccormickmarka easyceleganswormlifespanplottingandstatisticswithwlsplot |