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Identification and estimation of lodging in bread wheat genotypes using machine learning predictive algorithms

BACKGROUND: Lodging or stem bending decreases wheat yield quality and quantity. Thus, the traits reflected in early lodging wheat are helpful for early monitoring to some extent. In order to identify the superior genotypes and compare multiple linear regression (MLR) with support vector regression (...

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Autores principales: Rabieyan, Ehsan, Darvishzadeh, Reza, Alipour, Hadi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10580605/
https://www.ncbi.nlm.nih.gov/pubmed/37848989
http://dx.doi.org/10.1186/s13007-023-01088-w
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author Rabieyan, Ehsan
Darvishzadeh, Reza
Alipour, Hadi
author_facet Rabieyan, Ehsan
Darvishzadeh, Reza
Alipour, Hadi
author_sort Rabieyan, Ehsan
collection PubMed
description BACKGROUND: Lodging or stem bending decreases wheat yield quality and quantity. Thus, the traits reflected in early lodging wheat are helpful for early monitoring to some extent. In order to identify the superior genotypes and compare multiple linear regression (MLR) with support vector regression (SVR), artificial neural network (ANN), and random forest regression (RF) for predicting lodging in Iranian wheat accessions, a total of 228 wheat accessions were cultivated under field conditions in an alpha-lattice experiment, randomized incomplete block design, with two replications in two cropping seasons (2018–2019 and 2019–2020). To measure traits, a total of 20 plants were isolated from each plot and were measured using image processing. RESULTS: The lodging score index (LS) had the highest positive correlation with plant height (r = 0.78**), Number of nodes (r = 0.71**), and internode length 1 (r = 0.70**). Genotypes were classified into four groups based on heat map output. The most lodging-resistant genotypes showed a lodging index of zero or close to zero. The findings revealed that the RF algorithm provided a more accurate estimate (R(2) = 0.887 and RMSE = 0.091 for training data and R(2) = 0.768 and RMSE = 0.124 for testing data) of wheat lodging than the ANN and SVR algorithms, and its robustness was as good as ANN but better than SVR. CONCLUSION: Overall, it seems that the RF model can provide a helpful predictive and exploratory tool to estimate wheat lodging in the field. This work can contribute to the adoption of managerial approaches for precise and non-destructive monitoring of lodging.
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spelling pubmed-105806052023-10-18 Identification and estimation of lodging in bread wheat genotypes using machine learning predictive algorithms Rabieyan, Ehsan Darvishzadeh, Reza Alipour, Hadi Plant Methods Research BACKGROUND: Lodging or stem bending decreases wheat yield quality and quantity. Thus, the traits reflected in early lodging wheat are helpful for early monitoring to some extent. In order to identify the superior genotypes and compare multiple linear regression (MLR) with support vector regression (SVR), artificial neural network (ANN), and random forest regression (RF) for predicting lodging in Iranian wheat accessions, a total of 228 wheat accessions were cultivated under field conditions in an alpha-lattice experiment, randomized incomplete block design, with two replications in two cropping seasons (2018–2019 and 2019–2020). To measure traits, a total of 20 plants were isolated from each plot and were measured using image processing. RESULTS: The lodging score index (LS) had the highest positive correlation with plant height (r = 0.78**), Number of nodes (r = 0.71**), and internode length 1 (r = 0.70**). Genotypes were classified into four groups based on heat map output. The most lodging-resistant genotypes showed a lodging index of zero or close to zero. The findings revealed that the RF algorithm provided a more accurate estimate (R(2) = 0.887 and RMSE = 0.091 for training data and R(2) = 0.768 and RMSE = 0.124 for testing data) of wheat lodging than the ANN and SVR algorithms, and its robustness was as good as ANN but better than SVR. CONCLUSION: Overall, it seems that the RF model can provide a helpful predictive and exploratory tool to estimate wheat lodging in the field. This work can contribute to the adoption of managerial approaches for precise and non-destructive monitoring of lodging. BioMed Central 2023-10-17 /pmc/articles/PMC10580605/ /pubmed/37848989 http://dx.doi.org/10.1186/s13007-023-01088-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Rabieyan, Ehsan
Darvishzadeh, Reza
Alipour, Hadi
Identification and estimation of lodging in bread wheat genotypes using machine learning predictive algorithms
title Identification and estimation of lodging in bread wheat genotypes using machine learning predictive algorithms
title_full Identification and estimation of lodging in bread wheat genotypes using machine learning predictive algorithms
title_fullStr Identification and estimation of lodging in bread wheat genotypes using machine learning predictive algorithms
title_full_unstemmed Identification and estimation of lodging in bread wheat genotypes using machine learning predictive algorithms
title_short Identification and estimation of lodging in bread wheat genotypes using machine learning predictive algorithms
title_sort identification and estimation of lodging in bread wheat genotypes using machine learning predictive algorithms
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10580605/
https://www.ncbi.nlm.nih.gov/pubmed/37848989
http://dx.doi.org/10.1186/s13007-023-01088-w
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