Cargando…

Identifying featured indels associated with SARS-CoV-2 fitness

As an RNA virus, severe acute respiratory coronavirus 2 (SARS-CoV-2) is known for frequent substitution mutations, and substitutions in important genome regions are often associated with viral fitness. However, whether indel mutations are related to viral fitness is generally ignored. Here we develo...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Xiang, Yan, Hongliang, Wong, Gary, Ouyang, Wanli, Cui, Jie
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2023
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10580940/ https://www.ncbi.nlm.nih.gov/pubmed/37698427 http://dx.doi.org/10.1128/spectrum.02269-23

Ejemplares similares

Indels in SARS-CoV-2 occur at template-switching hotspots
por: Chrisman, Brianna Sierra, et al.
Publicado: (2021)

Evolutionary Dynamics of Indels in SARS-CoV-2 Spike Glycoprotein
por: Rao, R Shyama Prasad, et al.
Publicado: (2021)

Increased Frequency of Indels in Hypervariable Regions of SARS-CoV-2 Proteins—A Possible Signature of Adaptive Selection
por: Alisoltani, Arghavan, et al.
Publicado: (2022)

Effects of mutations on SARS-CoV-2 fitness
por: Chirigati, Fernando
Publicado: (2022)

Electrostatic features for nucleocapsid proteins of SARS-CoV and SARS-CoV-2
por: Guo, Wenhan, et al.
Publicado: (2021)

Household transmission of SARS-CoV-2
por: Wang, Zhongliang, et al.
Publicado: (2020)

Identifying SARS-CoV-2 infected cells with scVDN
por: Hu, Huan, et al.
Publicado: (2023)

Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness
por: Obermeyer, Fritz, et al.
Publicado: (2022)

Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness
por: Obermeyer, Fritz, et al.
Publicado: (2022)

Fitness effects of mutations to SARS-CoV-2 proteins
por: Bloom, Jesse D., et al.
Publicado: (2023)

Fitness effects of mutations to SARS-CoV-2 proteins
por: Bloom, Jesse D, et al.
Publicado: (2023)

New Methods for Inferring the Distribution of Fitness Effects for INDELs and SNPs
por: Barton, Henry J, et al.
Publicado: (2018)

Nsp3-N interactions are critical for SARS-CoV-2 fitness and virulence
por: Li, Pengfei, et al.
Publicado: (2023)

D614G and SARS-CoV-2 replication fitness
por: Engelman, Kathleen D., et al.
Publicado: (2021)

SARS-CoV-2 in Pregnancy: Fitting Into the Existing Viral Repertoire
por: Rajput, Roopali, et al.
Publicado: (2021)

Biophysical principles predict fitness of SARS-CoV-2 variants
por: Wang, Dianzhuo, et al.
Publicado: (2023)

Identifying Structural Features of Nucleotide Analogues to Overcome SARS-CoV-2 Exonuclease Activity
por: Wang, Xuanting, et al.
Publicado: (2022)

Comparative transcriptome analysis of SARS-CoV, MERS-CoV, and SARS-CoV-2 to identify potential pathways for drug repurposing
por: Krishnamoorthy, Pandikannan, et al.
Publicado: (2021)

SARS-CoV-2: Origin, Intermediate Host and Allergenicity Features and Hypotheses
por: Huang, Yuyi, et al.
Publicado: (2021)

Imaging findings in coronavirus infections: SARS-CoV, MERS-CoV, and SARS-CoV-2
por: Franquet, Tomas, et al.
Publicado: (2020)

Emerging neurotropic features of SARS-CoV-2
por: Zhan, Wen-Rong, et al.
Publicado: (2021)

T-cell immunity of SARS-CoV: Implications for vaccine development against MERS-CoV
por: Liu, William J., et al.
Publicado: (2017)

Indel Reliability in Indel-Based Phylogenetic Inference
por: Ashkenazy, Haim, et al.
Publicado: (2014)

Lack of antibody-mediated cross-protection between SARS-CoV-2 and SARS-CoV infections
por: Yang, Ren, et al.
Publicado: (2020)

Disulfide stabilization reveals conserved dynamic features between SARS-CoV-1 and SARS-CoV-2 spikes
por: Zhang, Xixi, et al.
Publicado: (2023)

Potential Pathogenicity Determinants Identified from Structural Proteomics of SARS-CoV and SARS-CoV-2
por: Prates, Erica T, et al.
Publicado: (2020)

Two-step fitness selection for intra-host variations in SARS-CoV-2
por: Li, Jiarui, et al.
Publicado: (2022)

Novel indel mutation in the N gene of SARS-CoV-2 clinical samples that were diagnosed positive in a commercial RT-PCR assay
por: Lee, Sanghoo, et al.
Publicado: (2021)

The ongoing evolution of variants of concern and interest of SARS-CoV-2 in Brazil revealed by convergent indels in the amino (N)-terminal domain of the spike protein
por: Resende, Paola Cristina, et al.
Publicado: (2021)

SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels
por: Di Pasquale, Adriano, et al.
Publicado: (2021)

Decomposing the sources of SARS-CoV-2 fitness variation in the United States
por: Kepler, Lenora, et al.
Publicado: (2021)

Enhanced fitness of SARS-CoV-2 variant of concern Alpha but not Beta
por: Ulrich, Lorenz, et al.
Publicado: (2021)

SARS-CoV-2 variant evades antibodies whilst maintaining fitness
por: Flemming, Alexandra
Publicado: (2021)

SARS-CoV-2 mutations: the biological trackway towards viral fitness
por: Majumdar, Parinita, et al.
Publicado: (2021)

Cardiac Performance and Cardiopulmonary Fitness After Infection With SARS-CoV-2
por: Wood, Gregory, et al.
Publicado: (2022)

Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron
por: van Dorp, Christiaan, et al.
Publicado: (2022)

Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron
por: van Dorp, Christiaan, et al.
Publicado: (2022)

Cross-neutralization and viral fitness of SARS-CoV-2 Omicron sublineages
por: Xia, Hongjie, et al.
Publicado: (2023)

SARS-CoV-2 variant biology: immune escape, transmission and fitness
por: Carabelli, Alessandro M., et al.
Publicado: (2023)

SARS-CoV-2 spillover transmission due to recombination event
por: Shahhosseini, Nariman, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_ag41po9phhl0dje7lk2dc0e3kq