Cargando…

NeST: nested hierarchical structure identification in spatial transcriptomic data

Spatial gene expression in tissue is characterized by regions in which particular genes are enriched or depleted. Frequently, these regions contain nested inside them subregions with distinct expression patterns. Segmentation methods in spatial transcriptomic (ST) data extract disjoint regions maxim...

Descripción completa

Detalles Bibliográficos
Autores principales:	Walker, Benjamin L., Nie, Qing
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10582109/ https://www.ncbi.nlm.nih.gov/pubmed/37848426 http://dx.doi.org/10.1038/s41467-023-42343-x

Ejemplares similares

The NeuroAiD Safe Treatment (NeST) Registry: a protocol
por: Venketasubramanian, Narayanaswamy, et al.
Publicado: (2015)

Current practice and surgical outcomes of neoadjuvant chemotherapy for early breast cancer: UK NeST study
por: Fatayer, Hiba, et al.
Publicado: (2022)

Eradication of CD48-positive tumors by selectively enhanced YTS cells harnessing the lncRNA NeST
por: Kotzur, Rebecca, et al.
Publicado: (2023)

Corrigendum to: Current practice and surgical outcomes of neoadjuvant chemotherapy for early breast cancer: UK NeST study
por: Fatayer, Hiba, et al.
Publicado: (2022)

Hierarchically nested networks optimize the analysis of audiovisual speech
por: Chalas, Nikos, et al.
Publicado: (2023)

Hierarchical modularity of nested bow-ties in metabolic networks
por: Zhao, Jing, et al.
Publicado: (2006)

Adl ne H. n’est pas le terroriste qu’on décrit!»
Publicado: (2009)

The NeST (Neoadjuvant systemic therapy in breast cancer) study: National Practice Questionnaire of United Kingdom multi-disciplinary decision making
por: Whitehead, I., et al.
Publicado: (2021)

The importance of illumination in nest site choice and nest characteristics of cavity nesting birds
por: Podkowa, Paweł, et al.
Publicado: (2017)

Effect of nest composition, experience and nest quality on nest-building behaviour in the Bonelli’s Eagle
por: Martínez, José E., et al.
Publicado: (2022)

Defining biologically relevant and hierarchically nested population units to inform wildlife management
por: O'Donnell, Michael S., et al.
Publicado: (2022)

Nesting season, nest age, and disturbance, but not habitat characteristics, affect nest survival of Chinese grouse
por: Zhao, Jin-Ming, et al.
Publicado: (2020)

Hierarchical nesting of slow oscillations, spindles and ripples in the human hippocampus during sleep
por: Staresina, Bernhard P., et al.
Publicado: (2015)

Potential based, spatial simulation of dynamically nested particles
por: Köster, Till, et al.
Publicado: (2019)

Nest trampling and ground nesting birds: Quantifying temporal and spatial overlap between cattle activity and breeding redshank
por: Sharps, Elwyn, et al.
Publicado: (2017)

Influence of olfactory and visual cover on nest site selection and nest success for grassland‐nesting birds
por: Fogarty, Dillon T., et al.
Publicado: (2017)

Spatial patterns of extra-pair paternity in a waterbird colony: separating the effects of nesting density and nest site location
por: Minias, Piotr, et al.
Publicado: (2016)

A hierarchical nest survival model integrating incomplete temporally varying covariates
por: Converse, Sarah J, et al.
Publicado: (2013)

PyNEST: A Convenient Interface to the NEST Simulator
por: Eppler, Jochen Martin, et al.
Publicado: (2009)

Lesser Prairie‐chicken incubation behavior and nest success most influenced by nest vegetation structure
por: Gehrt, Jacquelyn M., et al.
Publicado: (2023)

Is it safe to nest near conspicuous neighbours? Spatial patterns in predation risk associated with the density of American Golden-Plover nests
por: Giroux, Marie-Andrée, et al.
Publicado: (2016)

The paradox of nest reuse: early breeding benefits reproduction, but nest reuse increases nest predation risk
por: Otterbeck, Andreas, et al.
Publicado: (2019)

Deciphering tissue structure and function using spatial transcriptomics
por: Walker, Benjamin L., et al.
Publicado: (2022)

Scientifique du CERN arrêté: Adl ne H. n’est pas le terroriste qu’on décrit!»
Publicado: (2009)

The cavity-nest ant Temnothorax crassispinus prefers larger nests
por: Mitrus, S.
Publicado: (2014)

Birds and Their Nests
Publicado: (1907)

Nested melanoma
por: Zardo, Davide, et al.
Publicado: (2021)

Home, dirty home: effect of old nest material on nest-site selection and breeding performance in a cavity-nesting raptor
por: Podofillini, Stefano, et al.
Publicado: (2018)

Teacher´s perceptions towards nest vs. non-nest dichotomy : /
por: Díaz Garrido, Paola Iveth
Publicado: (2013)

Size matters: nest colonization patterns for twig-nesting ants
por: Jiménez-Soto, Estelí, et al.
Publicado: (2015)

scGEM: Unveiling the Nested Tree-Structured Gene Co-Expressing Modules in Single Cell Transcriptome Data
por: Zhang, Han, et al.
Publicado: (2023)

RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations
por: Castro, Mauro AA, et al.
Publicado: (2012)

Location and Creation of Nest Sites for Ground-Nesting Bees in Apple Orchards
por: Fountain, Michelle T., et al.
Publicado: (2023)

Phenology of marine turtle nesting revealed by statistical model of the nesting season
por: Girondot, Marc, et al.
Publicado: (2006)

Why Wasp Foundresses Change Nests: Relatedness, Dominance, and Nest Quality
por: Seppä, Perttu, et al.
Publicado: (2012)

The use of the nest for parental roosting and thermal consequences of the nest for nestlings and parents
por: Nilsson, Jan-Åke, et al.
Publicado: (2017)

Deceptive nest defence in ground-nesting birds and the risk of intermediate strategies
por: Smith, Paul A., et al.
Publicado: (2018)

Bird nests as botanical time capsules: DNA barcoding identifies the contents of contemporary and historical nests
por: Rinkert, Alex, et al.
Publicado: (2021)

Influence of Climatic Factors and Nest Tree Characteristics on the Nest Structures of the Baya Weaver (Ploceus philippinus) in Peninsular Malaysia
por: Thiruvenggadam, Thiruvinothini, et al.
Publicado: (2022)

Geometric morphometrics of nested symmetries unravels hierarchical inter- and intra-individual variation in biological shapes
por: Savriama, Yoland, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_eungk4jtvea0h9hi88kneci7i9