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A computable biomedical knowledge object for calculating in‐hospital mortality for patients admitted with acute myocardial infarction

INTRODUCTION: Quality indicators play an essential role in a learning health system. They help healthcare providers to monitor the quality and safety of care delivered and to identify areas for improvement. Clinical quality indicators, therefore, need to be based on real world data. Generating relia...

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Autores principales: Sadsad, Rosemarie, Ruber, Gema, Zhou, Johnson, Nicklin, Steven, Tsafnat, Guy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10582239/
https://www.ncbi.nlm.nih.gov/pubmed/37860059
http://dx.doi.org/10.1002/lrh2.10388
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author Sadsad, Rosemarie
Ruber, Gema
Zhou, Johnson
Nicklin, Steven
Tsafnat, Guy
author_facet Sadsad, Rosemarie
Ruber, Gema
Zhou, Johnson
Nicklin, Steven
Tsafnat, Guy
author_sort Sadsad, Rosemarie
collection PubMed
description INTRODUCTION: Quality indicators play an essential role in a learning health system. They help healthcare providers to monitor the quality and safety of care delivered and to identify areas for improvement. Clinical quality indicators, therefore, need to be based on real world data. Generating reliable and actionable data routinely is challenging. Healthcare data are often stored in different formats and use different terminologies and coding systems, making it difficult to generate and compare indicator reports from different sources. METHODS: The Observational Health Sciences and Informatics community maintains the Observational Medical Outcomes Partnership Common Data Model (OMOP). This is an open data standard providing a computable and interoperable format for real world data. We implemented a Computable Biomedical Knowledge Object (CBK) in the Piano Platform based on OMOP. The CBK calculates an inpatient quality indicator and was illustrated using synthetic electronic health record (EHR) data in the open OMOP standard. RESULTS: The CBK reported the in‐hospital mortality of patients admitted for acute myocardial infarction (AMI) for the synthetic EHR dataset and includes interactive visualizations and the results of calculations. Value sets composed of OMOP concept codes for AMI and comorbidities used in the indicator calculation were also created. CONCLUSION: Computable biomedical knowledge (CBK) objects that operate on OMOP data can be reused across datasets that conform to OMOP. With OMOP being a widely used interoperability standard, quality indicators embedded in CBKs can accelerate the generation of evidence for targeted quality and safety management, improving care to benefit larger populations.
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spelling pubmed-105822392023-10-19 A computable biomedical knowledge object for calculating in‐hospital mortality for patients admitted with acute myocardial infarction Sadsad, Rosemarie Ruber, Gema Zhou, Johnson Nicklin, Steven Tsafnat, Guy Learn Health Syst Computable Knowledge Publications INTRODUCTION: Quality indicators play an essential role in a learning health system. They help healthcare providers to monitor the quality and safety of care delivered and to identify areas for improvement. Clinical quality indicators, therefore, need to be based on real world data. Generating reliable and actionable data routinely is challenging. Healthcare data are often stored in different formats and use different terminologies and coding systems, making it difficult to generate and compare indicator reports from different sources. METHODS: The Observational Health Sciences and Informatics community maintains the Observational Medical Outcomes Partnership Common Data Model (OMOP). This is an open data standard providing a computable and interoperable format for real world data. We implemented a Computable Biomedical Knowledge Object (CBK) in the Piano Platform based on OMOP. The CBK calculates an inpatient quality indicator and was illustrated using synthetic electronic health record (EHR) data in the open OMOP standard. RESULTS: The CBK reported the in‐hospital mortality of patients admitted for acute myocardial infarction (AMI) for the synthetic EHR dataset and includes interactive visualizations and the results of calculations. Value sets composed of OMOP concept codes for AMI and comorbidities used in the indicator calculation were also created. CONCLUSION: Computable biomedical knowledge (CBK) objects that operate on OMOP data can be reused across datasets that conform to OMOP. With OMOP being a widely used interoperability standard, quality indicators embedded in CBKs can accelerate the generation of evidence for targeted quality and safety management, improving care to benefit larger populations. John Wiley and Sons Inc. 2023-09-11 /pmc/articles/PMC10582239/ /pubmed/37860059 http://dx.doi.org/10.1002/lrh2.10388 Text en © 2023 Evidentli Pty Ltd. Learning Health Systems published by Wiley Periodicals LLC on behalf of University of Michigan. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Computable Knowledge Publications
Sadsad, Rosemarie
Ruber, Gema
Zhou, Johnson
Nicklin, Steven
Tsafnat, Guy
A computable biomedical knowledge object for calculating in‐hospital mortality for patients admitted with acute myocardial infarction
title A computable biomedical knowledge object for calculating in‐hospital mortality for patients admitted with acute myocardial infarction
title_full A computable biomedical knowledge object for calculating in‐hospital mortality for patients admitted with acute myocardial infarction
title_fullStr A computable biomedical knowledge object for calculating in‐hospital mortality for patients admitted with acute myocardial infarction
title_full_unstemmed A computable biomedical knowledge object for calculating in‐hospital mortality for patients admitted with acute myocardial infarction
title_short A computable biomedical knowledge object for calculating in‐hospital mortality for patients admitted with acute myocardial infarction
title_sort computable biomedical knowledge object for calculating in‐hospital mortality for patients admitted with acute myocardial infarction
topic Computable Knowledge Publications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10582239/
https://www.ncbi.nlm.nih.gov/pubmed/37860059
http://dx.doi.org/10.1002/lrh2.10388
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