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Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples

NMR-based analysis of metabolite mixtures provides crucial information on biological systems but mostly relies on 1D [Formula: see text] H experiments for maximizing sensitivity. However, strong peak overlap of [Formula: see text] H spectra often is a limitation for the analysis of inherently comple...

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Autores principales: Dey, Arnab, Charrier, Benoît, Lemaitre, Karine, Ribay, Victor, Eshchenko, Dmitry, Schnell, Marc, Melzi, Roberto, Stern, Quentin, Cousin, Samuel F., Kempf, James G., Jannin, Sami, Dumez, Jean-Nicolas, Giraudeau, Patrick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Copernicus GmbH 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583282/
https://www.ncbi.nlm.nih.gov/pubmed/37904870
http://dx.doi.org/10.5194/mr-3-183-2022
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author Dey, Arnab
Charrier, Benoît
Lemaitre, Karine
Ribay, Victor
Eshchenko, Dmitry
Schnell, Marc
Melzi, Roberto
Stern, Quentin
Cousin, Samuel F.
Kempf, James G.
Jannin, Sami
Dumez, Jean-Nicolas
Giraudeau, Patrick
author_facet Dey, Arnab
Charrier, Benoît
Lemaitre, Karine
Ribay, Victor
Eshchenko, Dmitry
Schnell, Marc
Melzi, Roberto
Stern, Quentin
Cousin, Samuel F.
Kempf, James G.
Jannin, Sami
Dumez, Jean-Nicolas
Giraudeau, Patrick
author_sort Dey, Arnab
collection PubMed
description NMR-based analysis of metabolite mixtures provides crucial information on biological systems but mostly relies on 1D [Formula: see text] H experiments for maximizing sensitivity. However, strong peak overlap of [Formula: see text] H spectra often is a limitation for the analysis of inherently complex biological mixtures. Dissolution dynamic nuclear polarization (d-DNP) improves NMR sensitivity by several orders of magnitude, which enables [Formula: see text] C NMR-based analysis of metabolites at natural abundance. We have recently demonstrated the successful introduction of d-DNP into a full untargeted metabolomics workflow applied to the study of plant metabolism. Here we describe the systematic optimization of d-DNP experimental settings for experiments at natural [Formula: see text] C abundance and show how the resolution, sensitivity, and ultimately the number of detectable signals improve as a result. We have systematically optimized the parameters involved (in a semi-automated prototype d-DNP system, from sample preparation to signal detection, aiming at providing an optimization guide for potential users of such a system, who may not be experts in instrumental development). The optimization procedure makes it possible to detect previously inaccessible protonated [Formula: see text] C signals of metabolites at natural abundance with at least 4 times improved line shape and a high repeatability compared to a previously reported d-DNP-enhanced untargeted metabolomic study. This extends the application scope of hyperpolarized [Formula: see text] C NMR at natural abundance and paves the way to a more general use of DNP-hyperpolarized NMR in metabolomics studies.
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spelling pubmed-105832822023-10-30 Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples Dey, Arnab Charrier, Benoît Lemaitre, Karine Ribay, Victor Eshchenko, Dmitry Schnell, Marc Melzi, Roberto Stern, Quentin Cousin, Samuel F. Kempf, James G. Jannin, Sami Dumez, Jean-Nicolas Giraudeau, Patrick Magn Reson (Gott) Research Article NMR-based analysis of metabolite mixtures provides crucial information on biological systems but mostly relies on 1D [Formula: see text] H experiments for maximizing sensitivity. However, strong peak overlap of [Formula: see text] H spectra often is a limitation for the analysis of inherently complex biological mixtures. Dissolution dynamic nuclear polarization (d-DNP) improves NMR sensitivity by several orders of magnitude, which enables [Formula: see text] C NMR-based analysis of metabolites at natural abundance. We have recently demonstrated the successful introduction of d-DNP into a full untargeted metabolomics workflow applied to the study of plant metabolism. Here we describe the systematic optimization of d-DNP experimental settings for experiments at natural [Formula: see text] C abundance and show how the resolution, sensitivity, and ultimately the number of detectable signals improve as a result. We have systematically optimized the parameters involved (in a semi-automated prototype d-DNP system, from sample preparation to signal detection, aiming at providing an optimization guide for potential users of such a system, who may not be experts in instrumental development). The optimization procedure makes it possible to detect previously inaccessible protonated [Formula: see text] C signals of metabolites at natural abundance with at least 4 times improved line shape and a high repeatability compared to a previously reported d-DNP-enhanced untargeted metabolomic study. This extends the application scope of hyperpolarized [Formula: see text] C NMR at natural abundance and paves the way to a more general use of DNP-hyperpolarized NMR in metabolomics studies. Copernicus GmbH 2022-09-29 /pmc/articles/PMC10583282/ /pubmed/37904870 http://dx.doi.org/10.5194/mr-3-183-2022 Text en Copyright: © 2022 Arnab Dey et al. https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit https://creativecommons.org/licenses/by/4.0/
spellingShingle Research Article
Dey, Arnab
Charrier, Benoît
Lemaitre, Karine
Ribay, Victor
Eshchenko, Dmitry
Schnell, Marc
Melzi, Roberto
Stern, Quentin
Cousin, Samuel F.
Kempf, James G.
Jannin, Sami
Dumez, Jean-Nicolas
Giraudeau, Patrick
Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples
title Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples
title_full Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples
title_fullStr Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples
title_full_unstemmed Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples
title_short Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples
title_sort fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)c nmr of metabolic samples
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583282/
https://www.ncbi.nlm.nih.gov/pubmed/37904870
http://dx.doi.org/10.5194/mr-3-183-2022
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