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Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples
NMR-based analysis of metabolite mixtures provides crucial information on biological systems but mostly relies on 1D [Formula: see text] H experiments for maximizing sensitivity. However, strong peak overlap of [Formula: see text] H spectra often is a limitation for the analysis of inherently comple...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Copernicus GmbH
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583282/ https://www.ncbi.nlm.nih.gov/pubmed/37904870 http://dx.doi.org/10.5194/mr-3-183-2022 |
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author | Dey, Arnab Charrier, Benoît Lemaitre, Karine Ribay, Victor Eshchenko, Dmitry Schnell, Marc Melzi, Roberto Stern, Quentin Cousin, Samuel F. Kempf, James G. Jannin, Sami Dumez, Jean-Nicolas Giraudeau, Patrick |
author_facet | Dey, Arnab Charrier, Benoît Lemaitre, Karine Ribay, Victor Eshchenko, Dmitry Schnell, Marc Melzi, Roberto Stern, Quentin Cousin, Samuel F. Kempf, James G. Jannin, Sami Dumez, Jean-Nicolas Giraudeau, Patrick |
author_sort | Dey, Arnab |
collection | PubMed |
description | NMR-based analysis of metabolite mixtures provides crucial information on biological systems but mostly relies on 1D [Formula: see text] H experiments for maximizing sensitivity. However, strong peak overlap of [Formula: see text] H spectra often is a limitation for the analysis of inherently complex biological mixtures. Dissolution dynamic nuclear polarization (d-DNP) improves NMR sensitivity by several orders of magnitude, which enables [Formula: see text] C NMR-based analysis of metabolites at natural abundance. We have recently demonstrated the successful introduction of d-DNP into a full untargeted metabolomics workflow applied to the study of plant metabolism. Here we describe the systematic optimization of d-DNP experimental settings for experiments at natural [Formula: see text] C abundance and show how the resolution, sensitivity, and ultimately the number of detectable signals improve as a result. We have systematically optimized the parameters involved (in a semi-automated prototype d-DNP system, from sample preparation to signal detection, aiming at providing an optimization guide for potential users of such a system, who may not be experts in instrumental development). The optimization procedure makes it possible to detect previously inaccessible protonated [Formula: see text] C signals of metabolites at natural abundance with at least 4 times improved line shape and a high repeatability compared to a previously reported d-DNP-enhanced untargeted metabolomic study. This extends the application scope of hyperpolarized [Formula: see text] C NMR at natural abundance and paves the way to a more general use of DNP-hyperpolarized NMR in metabolomics studies. |
format | Online Article Text |
id | pubmed-10583282 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Copernicus GmbH |
record_format | MEDLINE/PubMed |
spelling | pubmed-105832822023-10-30 Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples Dey, Arnab Charrier, Benoît Lemaitre, Karine Ribay, Victor Eshchenko, Dmitry Schnell, Marc Melzi, Roberto Stern, Quentin Cousin, Samuel F. Kempf, James G. Jannin, Sami Dumez, Jean-Nicolas Giraudeau, Patrick Magn Reson (Gott) Research Article NMR-based analysis of metabolite mixtures provides crucial information on biological systems but mostly relies on 1D [Formula: see text] H experiments for maximizing sensitivity. However, strong peak overlap of [Formula: see text] H spectra often is a limitation for the analysis of inherently complex biological mixtures. Dissolution dynamic nuclear polarization (d-DNP) improves NMR sensitivity by several orders of magnitude, which enables [Formula: see text] C NMR-based analysis of metabolites at natural abundance. We have recently demonstrated the successful introduction of d-DNP into a full untargeted metabolomics workflow applied to the study of plant metabolism. Here we describe the systematic optimization of d-DNP experimental settings for experiments at natural [Formula: see text] C abundance and show how the resolution, sensitivity, and ultimately the number of detectable signals improve as a result. We have systematically optimized the parameters involved (in a semi-automated prototype d-DNP system, from sample preparation to signal detection, aiming at providing an optimization guide for potential users of such a system, who may not be experts in instrumental development). The optimization procedure makes it possible to detect previously inaccessible protonated [Formula: see text] C signals of metabolites at natural abundance with at least 4 times improved line shape and a high repeatability compared to a previously reported d-DNP-enhanced untargeted metabolomic study. This extends the application scope of hyperpolarized [Formula: see text] C NMR at natural abundance and paves the way to a more general use of DNP-hyperpolarized NMR in metabolomics studies. Copernicus GmbH 2022-09-29 /pmc/articles/PMC10583282/ /pubmed/37904870 http://dx.doi.org/10.5194/mr-3-183-2022 Text en Copyright: © 2022 Arnab Dey et al. https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit https://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Article Dey, Arnab Charrier, Benoît Lemaitre, Karine Ribay, Victor Eshchenko, Dmitry Schnell, Marc Melzi, Roberto Stern, Quentin Cousin, Samuel F. Kempf, James G. Jannin, Sami Dumez, Jean-Nicolas Giraudeau, Patrick Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples |
title | Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples |
title_full | Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples |
title_fullStr | Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples |
title_full_unstemmed | Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples |
title_short | Fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)C NMR of metabolic samples |
title_sort | fine optimization of a dissolution dynamic nuclear polarization experimental setting for (13)c nmr of metabolic samples |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583282/ https://www.ncbi.nlm.nih.gov/pubmed/37904870 http://dx.doi.org/10.5194/mr-3-183-2022 |
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