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Asterics: a simple tool for the ExploRation and Integration of omiCS data

BACKGROUND: The rapid development of omics acquisition techniques has induced the production of a large volume of heterogeneous and multi-level omics datasets, which require specific and sometimes complex analyses to obtain relevant biological information. Here, we present ASTERICS (version 2.5), a...

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Autores principales: Maigné, Élise, Noirot, Céline, Henry, Julien, Adu Kesewaah, Yaa, Badin, Ludovic, Déjean, Sébastien, Guilmineau, Camille, Krebs, Arielle, Mathevet, Fanny, Segalini, Audrey, Thomassin, Laurent, Colongo, David, Gaspin, Christine, Liaubet, Laurence, Vialaneix, Nathalie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583411/
https://www.ncbi.nlm.nih.gov/pubmed/37853347
http://dx.doi.org/10.1186/s12859-023-05504-9
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author Maigné, Élise
Noirot, Céline
Henry, Julien
Adu Kesewaah, Yaa
Badin, Ludovic
Déjean, Sébastien
Guilmineau, Camille
Krebs, Arielle
Mathevet, Fanny
Segalini, Audrey
Thomassin, Laurent
Colongo, David
Gaspin, Christine
Liaubet, Laurence
Vialaneix, Nathalie
author_facet Maigné, Élise
Noirot, Céline
Henry, Julien
Adu Kesewaah, Yaa
Badin, Ludovic
Déjean, Sébastien
Guilmineau, Camille
Krebs, Arielle
Mathevet, Fanny
Segalini, Audrey
Thomassin, Laurent
Colongo, David
Gaspin, Christine
Liaubet, Laurence
Vialaneix, Nathalie
author_sort Maigné, Élise
collection PubMed
description BACKGROUND: The rapid development of omics acquisition techniques has induced the production of a large volume of heterogeneous and multi-level omics datasets, which require specific and sometimes complex analyses to obtain relevant biological information. Here, we present ASTERICS (version 2.5), a publicly available web interface for the analyses of omics datasets. RESULTS: ASTERICS is designed to make both standard and complex exploratory and integration analysis workflows easily available to biologists and to provide high quality interactive plots. Special care has been taken to provide a comprehensive documentation of the implemented analyses and to guide users toward sound analysis choices regarding some specific omics data. Data and analyses are organized in a comprehensive graphical workflow within ASTERICS workspace to facilitate the understanding of successive data editions and analyses leading to a given result. CONCLUSION: ASTERICS provides an easy to use platform for omics data exploration and integration. The modular organization of its open source code makes it easy to incorporate new workflows and analyses by external contributors. ASTERICS is available at https://asterics.miat.inrae.fr and can also be deployed using provided docker images.
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spelling pubmed-105834112023-10-19 Asterics: a simple tool for the ExploRation and Integration of omiCS data Maigné, Élise Noirot, Céline Henry, Julien Adu Kesewaah, Yaa Badin, Ludovic Déjean, Sébastien Guilmineau, Camille Krebs, Arielle Mathevet, Fanny Segalini, Audrey Thomassin, Laurent Colongo, David Gaspin, Christine Liaubet, Laurence Vialaneix, Nathalie BMC Bioinformatics Software BACKGROUND: The rapid development of omics acquisition techniques has induced the production of a large volume of heterogeneous and multi-level omics datasets, which require specific and sometimes complex analyses to obtain relevant biological information. Here, we present ASTERICS (version 2.5), a publicly available web interface for the analyses of omics datasets. RESULTS: ASTERICS is designed to make both standard and complex exploratory and integration analysis workflows easily available to biologists and to provide high quality interactive plots. Special care has been taken to provide a comprehensive documentation of the implemented analyses and to guide users toward sound analysis choices regarding some specific omics data. Data and analyses are organized in a comprehensive graphical workflow within ASTERICS workspace to facilitate the understanding of successive data editions and analyses leading to a given result. CONCLUSION: ASTERICS provides an easy to use platform for omics data exploration and integration. The modular organization of its open source code makes it easy to incorporate new workflows and analyses by external contributors. ASTERICS is available at https://asterics.miat.inrae.fr and can also be deployed using provided docker images. BioMed Central 2023-10-18 /pmc/articles/PMC10583411/ /pubmed/37853347 http://dx.doi.org/10.1186/s12859-023-05504-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Software
Maigné, Élise
Noirot, Céline
Henry, Julien
Adu Kesewaah, Yaa
Badin, Ludovic
Déjean, Sébastien
Guilmineau, Camille
Krebs, Arielle
Mathevet, Fanny
Segalini, Audrey
Thomassin, Laurent
Colongo, David
Gaspin, Christine
Liaubet, Laurence
Vialaneix, Nathalie
Asterics: a simple tool for the ExploRation and Integration of omiCS data
title Asterics: a simple tool for the ExploRation and Integration of omiCS data
title_full Asterics: a simple tool for the ExploRation and Integration of omiCS data
title_fullStr Asterics: a simple tool for the ExploRation and Integration of omiCS data
title_full_unstemmed Asterics: a simple tool for the ExploRation and Integration of omiCS data
title_short Asterics: a simple tool for the ExploRation and Integration of omiCS data
title_sort asterics: a simple tool for the exploration and integration of omics data
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583411/
https://www.ncbi.nlm.nih.gov/pubmed/37853347
http://dx.doi.org/10.1186/s12859-023-05504-9
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