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Firefly-SVM predictive model for breast cancer subgroup classification with clinicopathological parameters
BACKGROUND: Breast cancer is a highly predominant destructive disease among women characterised with varied tumour biology, molecular subgroups and diverse clinicopathological specifications. The potentiality of machine learning to transform complex medical data into meaningful knowledge has led to...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583530/ https://www.ncbi.nlm.nih.gov/pubmed/37860702 http://dx.doi.org/10.1177/20552076231207203 |
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author | Sarkar, Suvobrata Mali, Kalyani |
author_facet | Sarkar, Suvobrata Mali, Kalyani |
author_sort | Sarkar, Suvobrata |
collection | PubMed |
description | BACKGROUND: Breast cancer is a highly predominant destructive disease among women characterised with varied tumour biology, molecular subgroups and diverse clinicopathological specifications. The potentiality of machine learning to transform complex medical data into meaningful knowledge has led to its application in breast cancer detection and prognostic evaluation. OBJECTIVE: The emergence of data-driven diagnostic model for assisting clinicians in diagnostic decision making has gained an increasing curiosity in breast cancer identification and analysis. This motivated us to develop a breast cancer data-driven model for subtype classification more accurately. METHOD: In this article, we proposed a firefly-support vector machine (SVM) breast cancer predictive model that uses clinicopathological and demographic data gathered from various tertiary care cancer hospitals or oncological centres to distinguish between patients with triple-negative breast cancer (TNBC) and non-triple-negative breast cancer (non-TNBC). RESULTS: The results of the firefly-support vector machine (firefly-SVM) predictive model were distinguished from the traditional grid search-support vector machine (Grid-SVM) model, particle swarm optimisation-support vector machine (PSO-SVM) and genetic algorithm-support vector machine (GA-SVM) hybrid models through hyperparameter tuning. The findings show that the recommended firefly-SVM classification model outperformed other existing models in terms of prediction accuracy (93.4%, 86.6%, 69.6%) for automated SVM parameter selection. The effectiveness of the prediction model was also evaluated using well-known metrics, such as the F1-score, mean square error, area under the ROC curve, logarithmic loss and precision–recall curve. CONCLUSION: Firefly-SVM predictive model may be treated as an alternate tool for breast cancer subgroup classification that would benefit the clinicians for managing the patient with proper treatment and diagnostic outcome. |
format | Online Article Text |
id | pubmed-10583530 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-105835302023-10-19 Firefly-SVM predictive model for breast cancer subgroup classification with clinicopathological parameters Sarkar, Suvobrata Mali, Kalyani Digit Health Original Research BACKGROUND: Breast cancer is a highly predominant destructive disease among women characterised with varied tumour biology, molecular subgroups and diverse clinicopathological specifications. The potentiality of machine learning to transform complex medical data into meaningful knowledge has led to its application in breast cancer detection and prognostic evaluation. OBJECTIVE: The emergence of data-driven diagnostic model for assisting clinicians in diagnostic decision making has gained an increasing curiosity in breast cancer identification and analysis. This motivated us to develop a breast cancer data-driven model for subtype classification more accurately. METHOD: In this article, we proposed a firefly-support vector machine (SVM) breast cancer predictive model that uses clinicopathological and demographic data gathered from various tertiary care cancer hospitals or oncological centres to distinguish between patients with triple-negative breast cancer (TNBC) and non-triple-negative breast cancer (non-TNBC). RESULTS: The results of the firefly-support vector machine (firefly-SVM) predictive model were distinguished from the traditional grid search-support vector machine (Grid-SVM) model, particle swarm optimisation-support vector machine (PSO-SVM) and genetic algorithm-support vector machine (GA-SVM) hybrid models through hyperparameter tuning. The findings show that the recommended firefly-SVM classification model outperformed other existing models in terms of prediction accuracy (93.4%, 86.6%, 69.6%) for automated SVM parameter selection. The effectiveness of the prediction model was also evaluated using well-known metrics, such as the F1-score, mean square error, area under the ROC curve, logarithmic loss and precision–recall curve. CONCLUSION: Firefly-SVM predictive model may be treated as an alternate tool for breast cancer subgroup classification that would benefit the clinicians for managing the patient with proper treatment and diagnostic outcome. SAGE Publications 2023-10-16 /pmc/articles/PMC10583530/ /pubmed/37860702 http://dx.doi.org/10.1177/20552076231207203 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by-nc-nd/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 License (https://creativecommons.org/licenses/by-nc-nd/4.0/) which permits non-commercial use, reproduction and distribution of the work as published without adaptation or alteration, without further permission provided the original work is attributed as specified on the SAGE and Open Access page (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Original Research Sarkar, Suvobrata Mali, Kalyani Firefly-SVM predictive model for breast cancer subgroup classification with clinicopathological parameters |
title | Firefly-SVM predictive model for breast
cancer subgroup classification with clinicopathological parameters |
title_full | Firefly-SVM predictive model for breast
cancer subgroup classification with clinicopathological parameters |
title_fullStr | Firefly-SVM predictive model for breast
cancer subgroup classification with clinicopathological parameters |
title_full_unstemmed | Firefly-SVM predictive model for breast
cancer subgroup classification with clinicopathological parameters |
title_short | Firefly-SVM predictive model for breast
cancer subgroup classification with clinicopathological parameters |
title_sort | firefly-svm predictive model for breast
cancer subgroup classification with clinicopathological parameters |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583530/ https://www.ncbi.nlm.nih.gov/pubmed/37860702 http://dx.doi.org/10.1177/20552076231207203 |
work_keys_str_mv | AT sarkarsuvobrata fireflysvmpredictivemodelforbreastcancersubgroupclassificationwithclinicopathologicalparameters AT malikalyani fireflysvmpredictivemodelforbreastcancersubgroupclassificationwithclinicopathologicalparameters |