Cargando…
The complete chloroplast genome of Ocimum americanum Linnaeus 1755 and phylogenetic analysis among the Lamiaceae family
Ocimum americanum Linnaeus 1755 (Lemon basil) is an essential medicinal species in the Ocimum genus. Its leaf decoction is traditionally used to treat diabetes, constipation, diarrhea, piles, and dysentery. The essential oils from this species have intense fungicidal activity. The complete chloropla...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583627/ https://www.ncbi.nlm.nih.gov/pubmed/37859799 http://dx.doi.org/10.1080/23802359.2023.2264545 |
_version_ | 1785122595756048384 |
---|---|
author | Vineesh, Suresh Balaji, Raju Tanuja Parani, Madasamy |
author_facet | Vineesh, Suresh Balaji, Raju Tanuja Parani, Madasamy |
author_sort | Vineesh, Suresh |
collection | PubMed |
description | Ocimum americanum Linnaeus 1755 (Lemon basil) is an essential medicinal species in the Ocimum genus. Its leaf decoction is traditionally used to treat diabetes, constipation, diarrhea, piles, and dysentery. The essential oils from this species have intense fungicidal activity. The complete chloroplast genome sequence of O. americanum was assembled from Illumina paired-end sequencing data. The O. americanum chloroplast genome was 152,460 bp in length, containing a large single copy (LSC) region of 83,459 bp and a small single copy (SSC) region of 17,607 bp, separated by a pair of inverted repeats (IRs) of 25,697 bp. The genome contained 134 unique genes, including 89 protein-coding, 37 tRNA, and eight rRNA genes. Among them, nine genes had a single intron, and two genes contained two introns. The overall GC content of the chloroplast genome was 38%, while the corresponding values of LSC, SSC, and IR regions were 35.8%, 31.7%, and 43.1%, respectively. In the phylogenetic analysis, all the Ocimum species formed a group closely related to Plectranthus barbatus. O. americanum was more closely related to O. gratissimum and O. basilicum than the other species of Ocimum included in this study. |
format | Online Article Text |
id | pubmed-10583627 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-105836272023-10-19 The complete chloroplast genome of Ocimum americanum Linnaeus 1755 and phylogenetic analysis among the Lamiaceae family Vineesh, Suresh Balaji, Raju Tanuja Parani, Madasamy Mitochondrial DNA B Resour Plastome Announcement Ocimum americanum Linnaeus 1755 (Lemon basil) is an essential medicinal species in the Ocimum genus. Its leaf decoction is traditionally used to treat diabetes, constipation, diarrhea, piles, and dysentery. The essential oils from this species have intense fungicidal activity. The complete chloroplast genome sequence of O. americanum was assembled from Illumina paired-end sequencing data. The O. americanum chloroplast genome was 152,460 bp in length, containing a large single copy (LSC) region of 83,459 bp and a small single copy (SSC) region of 17,607 bp, separated by a pair of inverted repeats (IRs) of 25,697 bp. The genome contained 134 unique genes, including 89 protein-coding, 37 tRNA, and eight rRNA genes. Among them, nine genes had a single intron, and two genes contained two introns. The overall GC content of the chloroplast genome was 38%, while the corresponding values of LSC, SSC, and IR regions were 35.8%, 31.7%, and 43.1%, respectively. In the phylogenetic analysis, all the Ocimum species formed a group closely related to Plectranthus barbatus. O. americanum was more closely related to O. gratissimum and O. basilicum than the other species of Ocimum included in this study. Taylor & Francis 2023-10-16 /pmc/articles/PMC10583627/ /pubmed/37859799 http://dx.doi.org/10.1080/23802359.2023.2264545 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Plastome Announcement Vineesh, Suresh Balaji, Raju Tanuja Parani, Madasamy The complete chloroplast genome of Ocimum americanum Linnaeus 1755 and phylogenetic analysis among the Lamiaceae family |
title | The complete chloroplast genome of Ocimum americanum Linnaeus 1755 and phylogenetic analysis among the Lamiaceae family |
title_full | The complete chloroplast genome of Ocimum americanum Linnaeus 1755 and phylogenetic analysis among the Lamiaceae family |
title_fullStr | The complete chloroplast genome of Ocimum americanum Linnaeus 1755 and phylogenetic analysis among the Lamiaceae family |
title_full_unstemmed | The complete chloroplast genome of Ocimum americanum Linnaeus 1755 and phylogenetic analysis among the Lamiaceae family |
title_short | The complete chloroplast genome of Ocimum americanum Linnaeus 1755 and phylogenetic analysis among the Lamiaceae family |
title_sort | complete chloroplast genome of ocimum americanum linnaeus 1755 and phylogenetic analysis among the lamiaceae family |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10583627/ https://www.ncbi.nlm.nih.gov/pubmed/37859799 http://dx.doi.org/10.1080/23802359.2023.2264545 |
work_keys_str_mv | AT vineeshsuresh thecompletechloroplastgenomeofocimumamericanumlinnaeus1755andphylogeneticanalysisamongthelamiaceaefamily AT balajiraju thecompletechloroplastgenomeofocimumamericanumlinnaeus1755andphylogeneticanalysisamongthelamiaceaefamily AT tanuja thecompletechloroplastgenomeofocimumamericanumlinnaeus1755andphylogeneticanalysisamongthelamiaceaefamily AT paranimadasamy thecompletechloroplastgenomeofocimumamericanumlinnaeus1755andphylogeneticanalysisamongthelamiaceaefamily AT vineeshsuresh completechloroplastgenomeofocimumamericanumlinnaeus1755andphylogeneticanalysisamongthelamiaceaefamily AT balajiraju completechloroplastgenomeofocimumamericanumlinnaeus1755andphylogeneticanalysisamongthelamiaceaefamily AT tanuja completechloroplastgenomeofocimumamericanumlinnaeus1755andphylogeneticanalysisamongthelamiaceaefamily AT paranimadasamy completechloroplastgenomeofocimumamericanumlinnaeus1755andphylogeneticanalysisamongthelamiaceaefamily |