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Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection

Trypanosomiasis, a neglected tropical disease (NTD), challenges communities in sub-Saharan Africa and Latin America. The World Health Organization underscores the need for practical, field-adaptable diagnostics and rapid screening tools to address the negative impact of NTDs. While artificial intell...

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Autores principales: Anzaku, Esla Timothy, Mohammed, Mohammed Aliy, Ozbulak, Utku, Won, Jongbum, Hong, Hyesoo, Krishnamoorthy, Janarthanan, Van Hoecke, Sofie, Magez, Stefan, Van Messem, Arnout, De Neve, Wesley
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10584977/
https://www.ncbi.nlm.nih.gov/pubmed/37853038
http://dx.doi.org/10.1038/s41597-023-02608-y
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author Anzaku, Esla Timothy
Mohammed, Mohammed Aliy
Ozbulak, Utku
Won, Jongbum
Hong, Hyesoo
Krishnamoorthy, Janarthanan
Van Hoecke, Sofie
Magez, Stefan
Van Messem, Arnout
De Neve, Wesley
author_facet Anzaku, Esla Timothy
Mohammed, Mohammed Aliy
Ozbulak, Utku
Won, Jongbum
Hong, Hyesoo
Krishnamoorthy, Janarthanan
Van Hoecke, Sofie
Magez, Stefan
Van Messem, Arnout
De Neve, Wesley
author_sort Anzaku, Esla Timothy
collection PubMed
description Trypanosomiasis, a neglected tropical disease (NTD), challenges communities in sub-Saharan Africa and Latin America. The World Health Organization underscores the need for practical, field-adaptable diagnostics and rapid screening tools to address the negative impact of NTDs. While artificial intelligence has shown promising results in disease screening, the lack of curated datasets impedes progress. In response to this challenge, we developed the Tryp dataset, comprising microscopy images of unstained thick blood smears containing the Trypanosoma brucei brucei parasite. The Tryp dataset provides bounding box annotations for tightly enclosed regions containing the parasite for 3,085 positive images, and 93 images collected from negative blood samples. The Tryp dataset represents the largest of its kind. Furthermore, we provide a benchmark on three leading deep learning-based object detection techniques that demonstrate the feasibility of AI for this task. Overall, the availability of the Tryp dataset is expected to facilitate research advancements in diagnostic screening for this disease, which may lead to improved healthcare outcomes for the communities impacted.
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spelling pubmed-105849772023-10-20 Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection Anzaku, Esla Timothy Mohammed, Mohammed Aliy Ozbulak, Utku Won, Jongbum Hong, Hyesoo Krishnamoorthy, Janarthanan Van Hoecke, Sofie Magez, Stefan Van Messem, Arnout De Neve, Wesley Sci Data Data Descriptor Trypanosomiasis, a neglected tropical disease (NTD), challenges communities in sub-Saharan Africa and Latin America. The World Health Organization underscores the need for practical, field-adaptable diagnostics and rapid screening tools to address the negative impact of NTDs. While artificial intelligence has shown promising results in disease screening, the lack of curated datasets impedes progress. In response to this challenge, we developed the Tryp dataset, comprising microscopy images of unstained thick blood smears containing the Trypanosoma brucei brucei parasite. The Tryp dataset provides bounding box annotations for tightly enclosed regions containing the parasite for 3,085 positive images, and 93 images collected from negative blood samples. The Tryp dataset represents the largest of its kind. Furthermore, we provide a benchmark on three leading deep learning-based object detection techniques that demonstrate the feasibility of AI for this task. Overall, the availability of the Tryp dataset is expected to facilitate research advancements in diagnostic screening for this disease, which may lead to improved healthcare outcomes for the communities impacted. Nature Publishing Group UK 2023-10-18 /pmc/articles/PMC10584977/ /pubmed/37853038 http://dx.doi.org/10.1038/s41597-023-02608-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Anzaku, Esla Timothy
Mohammed, Mohammed Aliy
Ozbulak, Utku
Won, Jongbum
Hong, Hyesoo
Krishnamoorthy, Janarthanan
Van Hoecke, Sofie
Magez, Stefan
Van Messem, Arnout
De Neve, Wesley
Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection
title Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection
title_full Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection
title_fullStr Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection
title_full_unstemmed Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection
title_short Tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection
title_sort tryp: a dataset of microscopy images of unstained thick blood smears for trypanosome detection
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10584977/
https://www.ncbi.nlm.nih.gov/pubmed/37853038
http://dx.doi.org/10.1038/s41597-023-02608-y
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