Cargando…

DeepPeptide predicts cleaved peptides in proteins using conditional random fields

MOTIVATION: Peptides are ubiquitous throughout life and involved in a wide range of biological processes, ranging from neural signaling in higher organisms to antimicrobial peptides in bacteria. Many peptides are generated post-translationally by cleavage of precursor proteins and can thus not be de...

Descripción completa

Detalles Bibliográficos
Autores principales:	Teufel, Felix, Refsgaard, Jan Christian, Madsen, Christian Toft, Stahlhut, Carsten, Grønborg, Mads, Winther, Ole, Madsen, Dennis
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2023
Materias:	Original Paper
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10585352/ https://www.ncbi.nlm.nih.gov/pubmed/37812217 http://dx.doi.org/10.1093/bioinformatics/btad616

Ejemplares similares

Combining mass spectrometry and machine learning to discover bioactive peptides
por: Madsen, Christian T., et al.
Publicado: (2022)

Self-cleaving peptides for expression of multiple genes in Dictyostelium discoideum
por: Zhu, Xinwen, et al.
Publicado: (2023)

Detecting sequence signals in targeting peptides using deep learning
por: Almagro Armenteros, Jose Juan, et al.
Publicado: (2019)

Analysis artefacts of the INS-IGF2 fusion transcript
por: Wernersson, Rasmus, et al.
Publicado: (2015)

SignalP 6.0 predicts all five types of signal peptides using protein language models
por: Teufel, Felix, et al.
Publicado: (2022)

Peptide binding to cleaved CD31 dampens ischemia/reperfusion-induced intestinal injury
por: Hoang, Quoc Thang, et al.
Publicado: (2018)

Identification of c-Src Tyrosine Kinase Substrates Using Mass Spectrometry and Peptide Microarrays
por: Amanchy, Ramars, et al.
Publicado: (2008)

In vitro evaluation of digestive and endolysosomal enzymes to cleave CML-modified Ara h 1 peptides
por: Mattison, Christopher P, et al.
Publicado: (2015)

Specific Affinity Enrichment of Electrochemically Cleaved Peptides Based on Cu(II)-Mediated Spirolactone Tagging
por: Zhang, Tao, et al.
Publicado: (2017)

The dynamic landscape of peptide activity prediction
por: Bárcenas, Oriol, et al.
Publicado: (2022)

VapCs of Mycobacterium tuberculosis cleave RNAs essential for translation
por: Winther, Kristoffer, et al.
Publicado: (2016)

AnOxPePred: using deep learning for the prediction of antioxidative properties of peptides
por: Olsen, Tobias Hegelund, et al.
Publicado: (2020)

2A self-cleaving peptide-based multi-gene expression system in the silkworm Bombyx mori
por: Wang, Yuancheng, et al.
Publicado: (2015)

Matriptase cleaves the amyloid-beta peptide 1–42 at Arg-5, Lys-16, and Lys-28
por: Chen, Li-Mei, et al.
Publicado: (2019)

A slowly cleaved viral signal peptide acts as a protein-integral immune evasion domain
por: Seidel, Einat, et al.
Publicado: (2021)

Bone-derived C-terminal FGF23 cleaved peptides increase iron availability in acute inflammation
por: Courbon, Guillaume, et al.
Publicado: (2023)

Mutational Landscape of the Proglucagon-Derived Peptides
por: Lindquist, Peter, et al.
Publicado: (2021)

A Metalloproteinase Cocktail from the Venom of Protobothrops flavoviridis Cleaves Amyloid Beta Peptides at the α-Cleavage Site
por: Futai, Eugene, et al.
Publicado: (2023)

GPR114/ADGRG5 is activated by its tethered peptide agonist because it is a cleaved adhesion GPCR
por: Bernadyn, Tyler F., et al.
Publicado: (2023)

In Silico Prediction of Mutant HIV-1 Proteases Cleaving a Target Sequence
por: Jensen, Jan H., et al.
Publicado: (2014)

Pseudomonas aeruginosa elastase cleaves a C-terminal peptide from human thrombin that inhibits host inflammatory responses
por: van der Plas, Mariena J. A., et al.
Publicado: (2016)

Zinc Ion-Dependent Peptide Nucleic Acid-Based Artificial Enzyme that Cleaves RNA—Bulge Size and Sequence Dependence
por: Murtola, Merita, et al.
Publicado: (2017)

Catalytides derived from the Box A region in the ANA/BTG3 protein cleave amyloid-β fragment peptide
por: Hatakawa, Yusuke, et al.
Publicado: (2019)

The Inducible Intein-Mediated Self-Cleaving Tag (IIST) System: A Novel Purification and Amidation System for Peptides and Proteins
por: Aranko, A. Sesilja, et al.
Publicado: (2021)

Analysis and Prediction of the Critical Regions of Antimicrobial Peptides Based on Conditional Random Fields
por: Chang, Kuan Y., et al.
Publicado: (2015)

Pharmacological applications of natural peptide libraries
por: Koehbach, Johannes, et al.
Publicado: (2012)

Separation of Peptides with Forward Osmosis Biomimetic Membranes
por: Bajraktari, Niada, et al.
Publicado: (2016)

Conditional Antimicrobial Peptide Therapeutics
por: Ngambenjawong, Chayanon, et al.
Publicado: (2022)

Ubiquitin C-terminal hydrolases cleave isopeptide- and peptide-linked ubiquitin from structured proteins but do not edit ubiquitin homopolymers
por: Bett, John S., et al.
Publicado: (2015)

Withdrawal: Ceramide stabilizes β-site amyloid precursor protein-cleaving enzyme 1 and promotes amyloid β-peptide biogenesis
por: Puglielli, Luigi, et al.
Publicado: (2022)

Cleaving and migrating
por: Wells, William A.
Publicado: (2001)

Luminescent peptide tagging enables efficient screening for CRISPR-mediated knock-in in human induced pluripotent stem cells
por: Madsen, Ralitsa R., et al.
Publicado: (2019)

Cleaved intracellular plasminogen activator inhibitor 2 in human myeloleukaemia cells is a marker of apoptosis.
por: Jensen, P. H., et al.
Publicado: (1994)

Cleave and Rescue gamete killers create conditions for gene drive in plants
por: Oberhofer, Georg, et al.
Publicado: (2023)

Deep generative models for peptide design
por: Wan, Fangping, et al.
Publicado: (2022)

Nanopore Sensing of Botulinum Toxin Type B by Discriminating an Enzymatically Cleaved Peptide from a Synaptic Protein Synaptobrevin 2 Derivative
por: Wang, Yong, et al.
Publicado: (2014)

“Self-cleaving” 2A peptide from porcine teschovirus-1 mediates cleavage of dual fluorescent proteins in transgenic Eimeria tenella
por: Tang, Xinming, et al.
Publicado: (2016)

Echo and heart failure: when do people need an echo, and when do they need natriuretic peptides?
por: Modin, Daniel, et al.
Publicado: (2018)

Peptide Inhibitors of the α-Cobratoxin–Nicotinic Acetylcholine Receptor Interaction
por: Lynagh, Timothy, et al.
Publicado: (2020)

Insight on physicochemical properties governing peptide MS1 response in HPLC-ESI-MS/MS: A deep learning approach
por: Abdul-Khalek, Naim, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_ijfsi6tr577u73cpepf0ipe460