Cargando…

Nanopore PCR-cDNA sequencing of the biocontrol isolate Aspergillus flavus AF36 (NRRL 18543) informs gene annotation

Toxic molds in the Aspergillus genus synthesize carcinogenic aflatoxins which contaminate crops. The widely applied biocontrol isolate Aspergillus flavus AF36 (NRRL 18543) has a high-quality public genome but lacks corresponding gene annotations. We generated high-quality gene predictions for this i...

Descripción completa

Detalles Bibliográficos
Autores principales:	Legan, Andrew Wesley, Mehl, Hillary L., Varaksa, Alex, Callicott, Kenneth A.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2023
Materias:	Omics Data Sets
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10586124/ https://www.ncbi.nlm.nih.gov/pubmed/37728564 http://dx.doi.org/10.1128/MRA.00527-23

Ejemplares similares

Revised Transcriptome-Based Gene Annotation for Aspergillus flavus Strain NRRL 3357
por: Hatmaker, E. Anne, et al.
Publicado: (2020)

Oxford Nanopore Sequencing Reveals an Exotic Broad bean mottle virus Genome within Australian Grains Post-Entry Quarantine
por: Maina, S., et al.
Publicado: (2022)

Metagenome of a Bronchoalveolar Lavage Fluid Sample from a Confirmed COVID-19 Case in Quito, Ecuador, Obtained Using Oxford Nanopore MinION Technology
por: Márquez, Sully, et al.
Publicado: (2020)

Whole genome comparison of Aspergillus flavus L-morphotype strain NRRL 3357 (type) and S-morphotype strain AF70
por: Gilbert, Matthew K., et al.
Publicado: (2018)

Aspergillus flavus NRRL 35739, a Poor Biocontrol Agent, May Have Increased Relative Expression of Stress Response Genes
por: Pennerman, Kayla K., et al.
Publicado: (2019)

Transcriptome Sequence of Antibiotic-Treated Pseudomonas aeruginosa
por: Esani, Saika, et al.
Publicado: (2019)

Metagenomic Analysis of Samples from Three Bat Species Collected in the Amazon Rain Forest
por: Franco Filho, Luciano Chaves, et al.
Publicado: (2019)

High-Depth RNA-Seq Data Sets for Studying Gene Expression Changes Mediated by Phase-Variable DNA Methyltransferases in Nontypeable Haemophilus influenzae
por: Atack, John M., et al.
Publicado: (2019)

The Foliar Endophyte Phialocephala scopiformis DAOMC 229536 Proteome When Grown on Wood Used as the Sole Carbon Source
por: Bhatnagar, Jennifer M., et al.
Publicado: (2019)

Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost
por: Xue, Yaxin, et al.
Publicado: (2019)

Flood Season Microbiota from the Amazon Basin Lakes: Analysis with Metagenome Sequencing
por: Santos Júnior, Célio Dias, et al.
Publicado: (2019)

Transcriptome Sequencing Data Sets for Determining Gene Expression Changes Mediated by Phase-Variable DNA Methyltransferases in Nontypeable Haemophilus influenzae Strains Isolated from Patients with Chronic Obstructive Pulmonary Disease
por: Atack, John M., et al.
Publicado: (2019)

Transcriptomic Analysis of Mucor irregularis Containing a Negative Single-Stranded RNA Mycovirus
por: Barata, Rafael R., et al.
Publicado: (2019)

Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico “Dead Zone”
por: Thrash, J. Cameron, et al.
Publicado: (2018)

Multispecies Transcriptomics Data Set of Brugia malayi, Its Wolbachia Endosymbiont wBm, and Aedes aegypti across the B. malayi Life Cycle
por: Chung, Matthew, et al.
Publicado: (2018)

Fecal Metagenome Sequences from Lactating Dairy Cows Shedding Escherichia coli O157:H7
por: Salaheen, Serajus, et al.
Publicado: (2018)

A Divergent Strain of Culex pipiens-Associated Tunisia Virus in the Malaria Vector Anopheles epiroticus
por: Debat, Humberto J., et al.
Publicado: (2018)

16S rRNA Amplicon Sequencing of Seawater Microbiota from Quintero Bay, Chile, Affected by Oil Spills, Shows the Presence of an Oil-Degrading Marine Bacterial Guild Structured by the Bacterial Genera Alcanivorax, Cobetia, Halomonas, and Oleiphilus
por: Ibacache-Quiroga, Claudia, et al.
Publicado: (2018)

Metagenomics of the Viral Community in Three Cattle Slurry Samples
por: Sazinas, Pavelas, et al.
Publicado: (2019)

Transcriptome Sequencing Data Sets of Human Lung Epithelial Cells in the Course of Francisella tularensis Infection
por: Bercovich-Kinori, Adi, et al.
Publicado: (2020)

Metagenome-Assembled Genome Sequences from an Anoxygenic Photosynthetic Consortium Involved in Sulfur Cycling
por: Winkler, Lucia, et al.
Publicado: (2020)

Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina)
por: Peralta, Ariane L., et al.
Publicado: (2020)

Metagenomics of Wastewater Influent from Southern California Wastewater Treatment Facilities in the Era of COVID-19
por: Rothman, Jason A., et al.
Publicado: (2020)

Virome Structure of the Small Aral Sea
por: Alexyuk, Madina, et al.
Publicado: (2020)

Metagenomes of Wastewater at Different Treatment Stages in Central Germany
por: Schneider, Dominik, et al.
Publicado: (2020)

Metagenomes of Maize Rhizosphere Samples after Different Fertilization Treatments at Molelwane Farm, Located in North-West Province, South Africa
por: Babalola, Olubukola Oluranti, et al.
Publicado: (2020)

Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil
por: Chuckran, Peter F., et al.
Publicado: (2020)

Widespread Traces of Lytic Kaposi Sarcoma-Associated Herpesvirus in Primary Effusion Lymphoma at Single-Cell Resolution
por: Rondeau, Nicole C., et al.
Publicado: (2020)

Metagenome Sequences of a Wastewater Treatment Plant Digester Sludge-Derived Enrichment Culture
por: Nacke, Heiko, et al.
Publicado: (2020)

Terabase Metagenome Sequencing of Grassland Soil Microbiomes
por: Nelson, William C., et al.
Publicado: (2020)

Assembly of Bacterial Genomes from the Metagenomes of Three Lichen Species
por: Wicaksono, Wisnu Adi, et al.
Publicado: (2020)

Metagenome Sequences from Tidal Marsh and Marine Sediment from the Great Bay Estuary of New Hampshire
por: Moore, Brian M., et al.
Publicado: (2020)

Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities
por: Coleine, Claudia, et al.
Publicado: (2020)

Genome-Wide Identification of Transcription Start Sites in Two Alphaproteobacteria, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444
por: Myers, Kevin S., et al.
Publicado: (2020)

Transcriptome Sequencing Data of Bacillus anthracis Vollum ΔhtrA and Its Parental Strain, Isolated under Oxidative Stress
por: Chitlaru, Theodor, et al.
Publicado: (2020)

Reconstruction of Bacterial Metagenome-Assembled Genome Sequences from Alpine Bog Vegetation
por: Wicaksono, Wisnu Adi, et al.
Publicado: (2020)

Metagenomic Analysis of the Microbial Diversity in Solid Waste from Okhla Landfill, New Delhi, India
por: Yadav, Bindu, et al.
Publicado: (2020)

Coastal Ocean Metagenomes and Curated Metagenome-Assembled Genomes from Marsh Landing, Sapelo Island (Georgia, USA)
por: Damashek, Julian, et al.
Publicado: (2019)

Metagenomic Hi-C of a Healthy Human Fecal Microbiome Transplant Donor
por: DeMaere, Matthew Z., et al.
Publicado: (2020)

Metagenomic Sequences of Three Drinking Water and Two Shower Hose Biofilm Samples Treated with or without Copper-Silver Ionization
por: Stüken, Anke, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_3bummhb31gqf5v1184drr8g9sv