Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics

We used Hi-C proximity ligation with shotgun sequencing to retrieve metagenome-assembled genomes (MAGs) from the fecal microbiomes of two domestic cats (Felis catus). The genomes were assessed for completeness and contamination, classified taxonomically, and annotated for putative antimicrobial resi...

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Detalles Bibliográficos
Autores principales: Rojas, Connie A., Gardy, Jennifer, Eisen, Jonathan A., Ganz, Holly H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2023
Materias:
Omics Data Sets
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10586161/
https://www.ncbi.nlm.nih.gov/pubmed/37695121
http://dx.doi.org/10.1128/MRA.00601-23
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author Rojas, Connie A.
Gardy, Jennifer
Eisen, Jonathan A.
Ganz, Holly H.
author_facet Rojas, Connie A.
Gardy, Jennifer
Eisen, Jonathan A.
Ganz, Holly H.
author_sort Rojas, Connie A.
collection PubMed
description We used Hi-C proximity ligation with shotgun sequencing to retrieve metagenome-assembled genomes (MAGs) from the fecal microbiomes of two domestic cats (Felis catus). The genomes were assessed for completeness and contamination, classified taxonomically, and annotated for putative antimicrobial resistance (AMR) genes.
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spelling pubmed-105861612023-10-20 Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics Rojas, Connie A. Gardy, Jennifer Eisen, Jonathan A. Ganz, Holly H. Microbiol Resour Announc Omics Data Sets We used Hi-C proximity ligation with shotgun sequencing to retrieve metagenome-assembled genomes (MAGs) from the fecal microbiomes of two domestic cats (Felis catus). The genomes were assessed for completeness and contamination, classified taxonomically, and annotated for putative antimicrobial resistance (AMR) genes. American Society for Microbiology 2023-09-11 /pmc/articles/PMC10586161/ /pubmed/37695121 http://dx.doi.org/10.1128/MRA.00601-23 Text en Copyright © 2023 Rojas et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Omics Data Sets
Rojas, Connie A.
Gardy, Jennifer
Eisen, Jonathan A.
Ganz, Holly H.
Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics
title Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics
title_full Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics
title_fullStr Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics
title_full_unstemmed Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics
title_short Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics
title_sort recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (felis catus) using hi-c proximity ligation and shotgun metagenomics
topic Omics Data Sets
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10586161/
https://www.ncbi.nlm.nih.gov/pubmed/37695121
http://dx.doi.org/10.1128/MRA.00601-23
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