An improved Lodderomyces elongisporus NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype

Pacific Biosciences long-read sequencing was used to improve the genome assembly for Lodderomyces elongisporus strain NRRL YB-4239 (ATCC 11503). The new assembly included eight chromosomes that were substantiated by the electrophoretic karyotype. The nuclear genome was 16.1 Mb (37.2% GC) with 5,740...

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Autores principales: Hoyer, Lois L., Hogan, Elizabeth K., Freeman, Brian A., Walden, Kimberly K. O., Hernández, Alvaro G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2023
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10586162/
https://www.ncbi.nlm.nih.gov/pubmed/37772887
http://dx.doi.org/10.1128/MRA.00596-23
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author Hoyer, Lois L.
Hogan, Elizabeth K.
Freeman, Brian A.
Walden, Kimberly K. O.
Hernández, Alvaro G.
author_facet Hoyer, Lois L.
Hogan, Elizabeth K.
Freeman, Brian A.
Walden, Kimberly K. O.
Hernández, Alvaro G.
author_sort Hoyer, Lois L.
collection PubMed
description Pacific Biosciences long-read sequencing was used to improve the genome assembly for Lodderomyces elongisporus strain NRRL YB-4239 (ATCC 11503). The new assembly included eight chromosomes that were substantiated by the electrophoretic karyotype. The nuclear genome was 16.1 Mb (37.2% GC) with 5,740 genes predicted.
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spelling pubmed-105861622023-10-20 An improved Lodderomyces elongisporus NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype Hoyer, Lois L. Hogan, Elizabeth K. Freeman, Brian A. Walden, Kimberly K. O. Hernández, Alvaro G. Microbiol Resour Announc Genome Sequences Pacific Biosciences long-read sequencing was used to improve the genome assembly for Lodderomyces elongisporus strain NRRL YB-4239 (ATCC 11503). The new assembly included eight chromosomes that were substantiated by the electrophoretic karyotype. The nuclear genome was 16.1 Mb (37.2% GC) with 5,740 genes predicted. American Society for Microbiology 2023-09-29 /pmc/articles/PMC10586162/ /pubmed/37772887 http://dx.doi.org/10.1128/MRA.00596-23 Text en Copyright © 2023 Hoyer et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Hoyer, Lois L.
Hogan, Elizabeth K.
Freeman, Brian A.
Walden, Kimberly K. O.
Hernández, Alvaro G.
An improved Lodderomyces elongisporus NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype
title An improved Lodderomyces elongisporus NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype
title_full An improved Lodderomyces elongisporus NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype
title_fullStr An improved Lodderomyces elongisporus NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype
title_full_unstemmed An improved Lodderomyces elongisporus NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype
title_short An improved Lodderomyces elongisporus NRRL YB-4239 genome assembly substantiated by its electrophoretic karyotype
title_sort improved lodderomyces elongisporus nrrl yb-4239 genome assembly substantiated by its electrophoretic karyotype
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10586162/
https://www.ncbi.nlm.nih.gov/pubmed/37772887
http://dx.doi.org/10.1128/MRA.00596-23
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