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A comparison of neuroelectrophysiology databases

As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available intracranial neuroelectrophysiology data repositories: Data Arc...

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Autores principales: Subash, Priyanka, Gray, Alex, Boswell, Misque, Cohen, Samantha L., Garner, Rachael, Salehi, Sana, Fisher, Calvary, Hobel, Samuel, Ghosh, Satrajit, Halchenko, Yaroslav, Dichter, Benjamin, Poldrack, Russell A., Markiewicz, Chris, Hermes, Dora, Delorme, Arnaud, Makeig, Scott, Behan, Brendan, Sparks, Alana, Arnott, Stephen R, Wang, Zhengjia, Magnotti, John, Beauchamp, Michael S., Pouratian, Nader, Toga, Arthur W., Duncan, Dominique
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587056/
https://www.ncbi.nlm.nih.gov/pubmed/37857685
http://dx.doi.org/10.1038/s41597-023-02614-0
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author Subash, Priyanka
Gray, Alex
Boswell, Misque
Cohen, Samantha L.
Garner, Rachael
Salehi, Sana
Fisher, Calvary
Hobel, Samuel
Ghosh, Satrajit
Halchenko, Yaroslav
Dichter, Benjamin
Poldrack, Russell A.
Markiewicz, Chris
Hermes, Dora
Delorme, Arnaud
Makeig, Scott
Behan, Brendan
Sparks, Alana
Arnott, Stephen R
Wang, Zhengjia
Magnotti, John
Beauchamp, Michael S.
Pouratian, Nader
Toga, Arthur W.
Duncan, Dominique
author_facet Subash, Priyanka
Gray, Alex
Boswell, Misque
Cohen, Samantha L.
Garner, Rachael
Salehi, Sana
Fisher, Calvary
Hobel, Samuel
Ghosh, Satrajit
Halchenko, Yaroslav
Dichter, Benjamin
Poldrack, Russell A.
Markiewicz, Chris
Hermes, Dora
Delorme, Arnaud
Makeig, Scott
Behan, Brendan
Sparks, Alana
Arnott, Stephen R
Wang, Zhengjia
Magnotti, John
Beauchamp, Michael S.
Pouratian, Nader
Toga, Arthur W.
Duncan, Dominique
author_sort Subash, Priyanka
collection PubMed
description As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available intracranial neuroelectrophysiology data repositories: Data Archive for the BRAIN Initiative (DABI), Distributed Archives for Neurophysiology Data Integration (DANDI), OpenNeuro, and Brain-CODE. The aim of this review is to describe archives that provide researchers with tools to store, share, and reanalyze both human and non-human neurophysiology data based on criteria that are of interest to the neuroscientific community. The Brain Imaging Data Structure (BIDS) and Neurodata Without Borders (NWB) are utilized by these archives to make data more accessible to researchers by implementing a common standard. As the necessity for integrating large-scale analysis into data repository platforms continues to grow within the neuroscientific community, this article will highlight the various analytical and customizable tools developed within the chosen archives that may advance the field of neuroinformatics.
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spelling pubmed-105870562023-10-21 A comparison of neuroelectrophysiology databases Subash, Priyanka Gray, Alex Boswell, Misque Cohen, Samantha L. Garner, Rachael Salehi, Sana Fisher, Calvary Hobel, Samuel Ghosh, Satrajit Halchenko, Yaroslav Dichter, Benjamin Poldrack, Russell A. Markiewicz, Chris Hermes, Dora Delorme, Arnaud Makeig, Scott Behan, Brendan Sparks, Alana Arnott, Stephen R Wang, Zhengjia Magnotti, John Beauchamp, Michael S. Pouratian, Nader Toga, Arthur W. Duncan, Dominique Sci Data Article As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available intracranial neuroelectrophysiology data repositories: Data Archive for the BRAIN Initiative (DABI), Distributed Archives for Neurophysiology Data Integration (DANDI), OpenNeuro, and Brain-CODE. The aim of this review is to describe archives that provide researchers with tools to store, share, and reanalyze both human and non-human neurophysiology data based on criteria that are of interest to the neuroscientific community. The Brain Imaging Data Structure (BIDS) and Neurodata Without Borders (NWB) are utilized by these archives to make data more accessible to researchers by implementing a common standard. As the necessity for integrating large-scale analysis into data repository platforms continues to grow within the neuroscientific community, this article will highlight the various analytical and customizable tools developed within the chosen archives that may advance the field of neuroinformatics. Nature Publishing Group UK 2023-10-19 /pmc/articles/PMC10587056/ /pubmed/37857685 http://dx.doi.org/10.1038/s41597-023-02614-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Subash, Priyanka
Gray, Alex
Boswell, Misque
Cohen, Samantha L.
Garner, Rachael
Salehi, Sana
Fisher, Calvary
Hobel, Samuel
Ghosh, Satrajit
Halchenko, Yaroslav
Dichter, Benjamin
Poldrack, Russell A.
Markiewicz, Chris
Hermes, Dora
Delorme, Arnaud
Makeig, Scott
Behan, Brendan
Sparks, Alana
Arnott, Stephen R
Wang, Zhengjia
Magnotti, John
Beauchamp, Michael S.
Pouratian, Nader
Toga, Arthur W.
Duncan, Dominique
A comparison of neuroelectrophysiology databases
title A comparison of neuroelectrophysiology databases
title_full A comparison of neuroelectrophysiology databases
title_fullStr A comparison of neuroelectrophysiology databases
title_full_unstemmed A comparison of neuroelectrophysiology databases
title_short A comparison of neuroelectrophysiology databases
title_sort comparison of neuroelectrophysiology databases
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587056/
https://www.ncbi.nlm.nih.gov/pubmed/37857685
http://dx.doi.org/10.1038/s41597-023-02614-0
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