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Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field

Breeding for resilience to climate change requires considering adaptive traits such as plant architecture, stomatal conductance and growth, beyond the current selection for yield. Robotized indoor phenotyping allows measuring such traits at high throughput for speed breeding, but is often considered...

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Autores principales: Bouidghaghen, Jugurta, Moreau, Laurence, Beauchêne, Katia, Chapuis, Romain, Mangel, Nathalie, Cabrera‐Bosquet, Llorenç, Welcker, Claude, Bogard, Matthieu, Tardieu, François
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587076/
https://www.ncbi.nlm.nih.gov/pubmed/37857601
http://dx.doi.org/10.1038/s41467-023-42298-z
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author Bouidghaghen, Jugurta
Moreau, Laurence
Beauchêne, Katia
Chapuis, Romain
Mangel, Nathalie
Cabrera‐Bosquet, Llorenç
Welcker, Claude
Bogard, Matthieu
Tardieu, François
author_facet Bouidghaghen, Jugurta
Moreau, Laurence
Beauchêne, Katia
Chapuis, Romain
Mangel, Nathalie
Cabrera‐Bosquet, Llorenç
Welcker, Claude
Bogard, Matthieu
Tardieu, François
author_sort Bouidghaghen, Jugurta
collection PubMed
description Breeding for resilience to climate change requires considering adaptive traits such as plant architecture, stomatal conductance and growth, beyond the current selection for yield. Robotized indoor phenotyping allows measuring such traits at high throughput for speed breeding, but is often considered as non-relevant for field conditions. Here, we show that maize adaptive traits can be inferred in different fields, based on genotypic values obtained indoor and on environmental conditions in each considered field. The modelling of environmental effects allows translation from indoor to fields, but also from one field to another field. Furthermore, genotypic values of considered traits match between indoor and field conditions. Genomic prediction results in adequate ranking of genotypes for the tested traits, although with lesser precision for elite varieties presenting reduced phenotypic variability. Hence, it distinguishes genotypes with high or low values for adaptive traits, conferring either spender or conservative strategies for water use under future climates.
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spelling pubmed-105870762023-10-21 Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field Bouidghaghen, Jugurta Moreau, Laurence Beauchêne, Katia Chapuis, Romain Mangel, Nathalie Cabrera‐Bosquet, Llorenç Welcker, Claude Bogard, Matthieu Tardieu, François Nat Commun Article Breeding for resilience to climate change requires considering adaptive traits such as plant architecture, stomatal conductance and growth, beyond the current selection for yield. Robotized indoor phenotyping allows measuring such traits at high throughput for speed breeding, but is often considered as non-relevant for field conditions. Here, we show that maize adaptive traits can be inferred in different fields, based on genotypic values obtained indoor and on environmental conditions in each considered field. The modelling of environmental effects allows translation from indoor to fields, but also from one field to another field. Furthermore, genotypic values of considered traits match between indoor and field conditions. Genomic prediction results in adequate ranking of genotypes for the tested traits, although with lesser precision for elite varieties presenting reduced phenotypic variability. Hence, it distinguishes genotypes with high or low values for adaptive traits, conferring either spender or conservative strategies for water use under future climates. Nature Publishing Group UK 2023-10-19 /pmc/articles/PMC10587076/ /pubmed/37857601 http://dx.doi.org/10.1038/s41467-023-42298-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Bouidghaghen, Jugurta
Moreau, Laurence
Beauchêne, Katia
Chapuis, Romain
Mangel, Nathalie
Cabrera‐Bosquet, Llorenç
Welcker, Claude
Bogard, Matthieu
Tardieu, François
Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field
title Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field
title_full Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field
title_fullStr Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field
title_full_unstemmed Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field
title_short Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field
title_sort robotized indoor phenotyping allows genomic prediction of adaptive traits in the field
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587076/
https://www.ncbi.nlm.nih.gov/pubmed/37857601
http://dx.doi.org/10.1038/s41467-023-42298-z
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