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Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs

Anti-Microbial Peptide Database version 1 (AMPDB v1) is a meticulously curated resource that aims to address the limitations of existing databases in the field of antimicrobial research. We have utilized the latest technology and put our best efforts into adding all relevant tools to cater to the ne...

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Autores principales: Mondal, Rajat Kumar, Sen, Debarup, Arya, Ankish, Samanta, Sintu Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587344/
https://www.ncbi.nlm.nih.gov/pubmed/37857659
http://dx.doi.org/10.1038/s41598-023-45016-3
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author Mondal, Rajat Kumar
Sen, Debarup
Arya, Ankish
Samanta, Sintu Kumar
author_facet Mondal, Rajat Kumar
Sen, Debarup
Arya, Ankish
Samanta, Sintu Kumar
author_sort Mondal, Rajat Kumar
collection PubMed
description Anti-Microbial Peptide Database version 1 (AMPDB v1) is a meticulously curated resource that aims to address the limitations of existing databases in the field of antimicrobial research. We have utilized the latest technology and put our best efforts into adding all relevant tools to cater to the needs of our users. AMPDB v1 is a derived database, built upon information gathered from the available resources and boasts a significant size of 59,122 entries which are classified into 88 classes. All the information in this resource was curated manually. Sequence alignment and protein feature calculation tools were integrated into the database in the form of web applications, to make them easy to use, quick, and responsive in real-time. We have included multiple types of browsing and searching options to enhance the user experience, from simple text search to a completely customizable advanced search page with intuitive options that let the user combine multiple options together to make a powerful search query. The database is accessible by a web browser at https://bblserver.org.in/ampdb/.
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spelling pubmed-105873442023-10-21 Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs Mondal, Rajat Kumar Sen, Debarup Arya, Ankish Samanta, Sintu Kumar Sci Rep Article Anti-Microbial Peptide Database version 1 (AMPDB v1) is a meticulously curated resource that aims to address the limitations of existing databases in the field of antimicrobial research. We have utilized the latest technology and put our best efforts into adding all relevant tools to cater to the needs of our users. AMPDB v1 is a derived database, built upon information gathered from the available resources and boasts a significant size of 59,122 entries which are classified into 88 classes. All the information in this resource was curated manually. Sequence alignment and protein feature calculation tools were integrated into the database in the form of web applications, to make them easy to use, quick, and responsive in real-time. We have included multiple types of browsing and searching options to enhance the user experience, from simple text search to a completely customizable advanced search page with intuitive options that let the user combine multiple options together to make a powerful search query. The database is accessible by a web browser at https://bblserver.org.in/ampdb/. Nature Publishing Group UK 2023-10-19 /pmc/articles/PMC10587344/ /pubmed/37857659 http://dx.doi.org/10.1038/s41598-023-45016-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Mondal, Rajat Kumar
Sen, Debarup
Arya, Ankish
Samanta, Sintu Kumar
Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs
title Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs
title_full Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs
title_fullStr Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs
title_full_unstemmed Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs
title_short Developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated AMPs
title_sort developing anti-microbial peptide database version 1 to provide comprehensive and exhaustive resource of manually curated amps
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587344/
https://www.ncbi.nlm.nih.gov/pubmed/37857659
http://dx.doi.org/10.1038/s41598-023-45016-3
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