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Prognostic risk of immune-associated signature in the microenvironment of brain gliomas

Understanding the key factors in the tumor microenvironment (TME) that affect the prognosis of gliomas is crucial. In this study, we sought to uncover the prognostic significance of immune cells and immune-related genes in the TME of gliomas. We incorporated data of 970 glioma patient samples from t...

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Autores principales: Tao, Yaling, Zhu, Junqi, Yu, Xiaoling, Cong, Huaiwei, Li, Jinpeng, Cai, Ting, Chen, Qian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587408/
https://www.ncbi.nlm.nih.gov/pubmed/37867596
http://dx.doi.org/10.3389/fgene.2023.1208651
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author Tao, Yaling
Zhu, Junqi
Yu, Xiaoling
Cong, Huaiwei
Li, Jinpeng
Cai, Ting
Chen, Qian
author_facet Tao, Yaling
Zhu, Junqi
Yu, Xiaoling
Cong, Huaiwei
Li, Jinpeng
Cai, Ting
Chen, Qian
author_sort Tao, Yaling
collection PubMed
description Understanding the key factors in the tumor microenvironment (TME) that affect the prognosis of gliomas is crucial. In this study, we sought to uncover the prognostic significance of immune cells and immune-related genes in the TME of gliomas. We incorporated data of 970 glioma patient samples from the Chinese Glioma Genome Atlas (CGGA) database as the training set, and an additional set of 666 samples from The Cancer Genome Atlas (TCGA) database served as the validation set. From our analysis, we identified 21 immune-related differentially expressed genes (DEGs) in the TME, which holds implications for glioma prognosis. Based on these genes, we constructed a prognostic risk model on the 21 genes. The prognostic risk model demonstrated robust performance with an area under the curve (AUC) value of 0.848. Notably, the risk score derived from the model emerged as an independent prognostic factor of gliomas, with high risk scores indicative of an unfavorable prognosis. Furthermore, we observed that high infiltration levels of certain immune cells, namely, activated dendritic cells, M0 macrophages, M2 macrophages, and regulatory T cells (Tregs), correlated with an unfavorable glioma prognosis. In conclusion, our findings suggested that the TME of gliomas harbored a distinct immune-associated signature, comprising 21 immune-related genes and specific immune cells. These elements significantly influence the prognosis and present potential as novel indicators in the clinical assessment of glioma patient outcomes.
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spelling pubmed-105874082023-10-21 Prognostic risk of immune-associated signature in the microenvironment of brain gliomas Tao, Yaling Zhu, Junqi Yu, Xiaoling Cong, Huaiwei Li, Jinpeng Cai, Ting Chen, Qian Front Genet Genetics Understanding the key factors in the tumor microenvironment (TME) that affect the prognosis of gliomas is crucial. In this study, we sought to uncover the prognostic significance of immune cells and immune-related genes in the TME of gliomas. We incorporated data of 970 glioma patient samples from the Chinese Glioma Genome Atlas (CGGA) database as the training set, and an additional set of 666 samples from The Cancer Genome Atlas (TCGA) database served as the validation set. From our analysis, we identified 21 immune-related differentially expressed genes (DEGs) in the TME, which holds implications for glioma prognosis. Based on these genes, we constructed a prognostic risk model on the 21 genes. The prognostic risk model demonstrated robust performance with an area under the curve (AUC) value of 0.848. Notably, the risk score derived from the model emerged as an independent prognostic factor of gliomas, with high risk scores indicative of an unfavorable prognosis. Furthermore, we observed that high infiltration levels of certain immune cells, namely, activated dendritic cells, M0 macrophages, M2 macrophages, and regulatory T cells (Tregs), correlated with an unfavorable glioma prognosis. In conclusion, our findings suggested that the TME of gliomas harbored a distinct immune-associated signature, comprising 21 immune-related genes and specific immune cells. These elements significantly influence the prognosis and present potential as novel indicators in the clinical assessment of glioma patient outcomes. Frontiers Media S.A. 2023-10-06 /pmc/articles/PMC10587408/ /pubmed/37867596 http://dx.doi.org/10.3389/fgene.2023.1208651 Text en Copyright © 2023 Tao, Zhu, Yu, Cong, Li, Cai and Chen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Tao, Yaling
Zhu, Junqi
Yu, Xiaoling
Cong, Huaiwei
Li, Jinpeng
Cai, Ting
Chen, Qian
Prognostic risk of immune-associated signature in the microenvironment of brain gliomas
title Prognostic risk of immune-associated signature in the microenvironment of brain gliomas
title_full Prognostic risk of immune-associated signature in the microenvironment of brain gliomas
title_fullStr Prognostic risk of immune-associated signature in the microenvironment of brain gliomas
title_full_unstemmed Prognostic risk of immune-associated signature in the microenvironment of brain gliomas
title_short Prognostic risk of immune-associated signature in the microenvironment of brain gliomas
title_sort prognostic risk of immune-associated signature in the microenvironment of brain gliomas
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587408/
https://www.ncbi.nlm.nih.gov/pubmed/37867596
http://dx.doi.org/10.3389/fgene.2023.1208651
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