Cargando…

Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics

The role of immune cells in the pathogenesis of ischemic heart failure (IHF) is well-established. However, identifying key genes in patients with IHF remains a challenge. We obtained two IHF datasets from the GEO database (GSE76701 and GSE21610), and identified four potential diagnostic candidate ge...

Descripción completa

Detalles Bibliográficos
Autores principales: Yu, Yiding, Liu, Xiujuan, Xue, Yitao, Li, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587531/
https://www.ncbi.nlm.nih.gov/pubmed/37867954
http://dx.doi.org/10.1016/j.isci.2023.108121
_version_ 1785123385129304064
author Yu, Yiding
Liu, Xiujuan
Xue, Yitao
Li, Yan
author_facet Yu, Yiding
Liu, Xiujuan
Xue, Yitao
Li, Yan
author_sort Yu, Yiding
collection PubMed
description The role of immune cells in the pathogenesis of ischemic heart failure (IHF) is well-established. However, identifying key genes in patients with IHF remains a challenge. We obtained two IHF datasets from the GEO database (GSE76701 and GSE21610), and identified four potential diagnostic candidate genes for IHF by using bioinformatics and machine learning algorithms, namely RNASE2, MFAP4, CHRDL1, and KCNN3. We constructed nomogram and validated the diagnostic value of these genes on additional GEO datasets (GSE57338). The results showed that these four genes had high diagnostic value (area under the curve value of 0.961). Furthermore, our immune infiltration analysis revealed the presence of three dysregulated immune cells in IHF, namely macrophages M2, monocytes, and T cells gamma delta. We also explored the potential molecular mechanisms of IHF. These findings provide new insights into the pathogenesis, diagnosis, and treatment of IHF.
format Online
Article
Text
id pubmed-10587531
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-105875312023-10-21 Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics Yu, Yiding Liu, Xiujuan Xue, Yitao Li, Yan iScience Article The role of immune cells in the pathogenesis of ischemic heart failure (IHF) is well-established. However, identifying key genes in patients with IHF remains a challenge. We obtained two IHF datasets from the GEO database (GSE76701 and GSE21610), and identified four potential diagnostic candidate genes for IHF by using bioinformatics and machine learning algorithms, namely RNASE2, MFAP4, CHRDL1, and KCNN3. We constructed nomogram and validated the diagnostic value of these genes on additional GEO datasets (GSE57338). The results showed that these four genes had high diagnostic value (area under the curve value of 0.961). Furthermore, our immune infiltration analysis revealed the presence of three dysregulated immune cells in IHF, namely macrophages M2, monocytes, and T cells gamma delta. We also explored the potential molecular mechanisms of IHF. These findings provide new insights into the pathogenesis, diagnosis, and treatment of IHF. Elsevier 2023-10-04 /pmc/articles/PMC10587531/ /pubmed/37867954 http://dx.doi.org/10.1016/j.isci.2023.108121 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Yu, Yiding
Liu, Xiujuan
Xue, Yitao
Li, Yan
Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics
title Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics
title_full Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics
title_fullStr Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics
title_full_unstemmed Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics
title_short Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics
title_sort identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587531/
https://www.ncbi.nlm.nih.gov/pubmed/37867954
http://dx.doi.org/10.1016/j.isci.2023.108121
work_keys_str_mv AT yuyiding identificationofimmunerelatedgenesforthediagnosisofischemicheartfailurebasedonbioinformatics
AT liuxiujuan identificationofimmunerelatedgenesforthediagnosisofischemicheartfailurebasedonbioinformatics
AT xueyitao identificationofimmunerelatedgenesforthediagnosisofischemicheartfailurebasedonbioinformatics
AT liyan identificationofimmunerelatedgenesforthediagnosisofischemicheartfailurebasedonbioinformatics