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Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics
The role of immune cells in the pathogenesis of ischemic heart failure (IHF) is well-established. However, identifying key genes in patients with IHF remains a challenge. We obtained two IHF datasets from the GEO database (GSE76701 and GSE21610), and identified four potential diagnostic candidate ge...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587531/ https://www.ncbi.nlm.nih.gov/pubmed/37867954 http://dx.doi.org/10.1016/j.isci.2023.108121 |
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author | Yu, Yiding Liu, Xiujuan Xue, Yitao Li, Yan |
author_facet | Yu, Yiding Liu, Xiujuan Xue, Yitao Li, Yan |
author_sort | Yu, Yiding |
collection | PubMed |
description | The role of immune cells in the pathogenesis of ischemic heart failure (IHF) is well-established. However, identifying key genes in patients with IHF remains a challenge. We obtained two IHF datasets from the GEO database (GSE76701 and GSE21610), and identified four potential diagnostic candidate genes for IHF by using bioinformatics and machine learning algorithms, namely RNASE2, MFAP4, CHRDL1, and KCNN3. We constructed nomogram and validated the diagnostic value of these genes on additional GEO datasets (GSE57338). The results showed that these four genes had high diagnostic value (area under the curve value of 0.961). Furthermore, our immune infiltration analysis revealed the presence of three dysregulated immune cells in IHF, namely macrophages M2, monocytes, and T cells gamma delta. We also explored the potential molecular mechanisms of IHF. These findings provide new insights into the pathogenesis, diagnosis, and treatment of IHF. |
format | Online Article Text |
id | pubmed-10587531 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-105875312023-10-21 Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics Yu, Yiding Liu, Xiujuan Xue, Yitao Li, Yan iScience Article The role of immune cells in the pathogenesis of ischemic heart failure (IHF) is well-established. However, identifying key genes in patients with IHF remains a challenge. We obtained two IHF datasets from the GEO database (GSE76701 and GSE21610), and identified four potential diagnostic candidate genes for IHF by using bioinformatics and machine learning algorithms, namely RNASE2, MFAP4, CHRDL1, and KCNN3. We constructed nomogram and validated the diagnostic value of these genes on additional GEO datasets (GSE57338). The results showed that these four genes had high diagnostic value (area under the curve value of 0.961). Furthermore, our immune infiltration analysis revealed the presence of three dysregulated immune cells in IHF, namely macrophages M2, monocytes, and T cells gamma delta. We also explored the potential molecular mechanisms of IHF. These findings provide new insights into the pathogenesis, diagnosis, and treatment of IHF. Elsevier 2023-10-04 /pmc/articles/PMC10587531/ /pubmed/37867954 http://dx.doi.org/10.1016/j.isci.2023.108121 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Yu, Yiding Liu, Xiujuan Xue, Yitao Li, Yan Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics |
title | Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics |
title_full | Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics |
title_fullStr | Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics |
title_full_unstemmed | Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics |
title_short | Identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics |
title_sort | identification of immune-related genes for the diagnosis of ischemic heart failure based on bioinformatics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10587531/ https://www.ncbi.nlm.nih.gov/pubmed/37867954 http://dx.doi.org/10.1016/j.isci.2023.108121 |
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