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A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk

BACKGROUND: Aedes (Stegomyia)-borne diseases are an expanding global threat, but gaps in surveillance make comprehensive and comparable risk assessments challenging. Geostatistical models combine data from multiple locations and use links with environmental and socioeconomic factors to make predicti...

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Autores principales: Lim, Ah-Young, Jafari, Yalda, Caldwell, Jamie M., Clapham, Hannah E., Gaythorpe, Katy A. M., Hussain-Alkhateeb, Laith, Johansson, Michael A., Kraemer, Moritz U. G., Maude, Richard J., McCormack, Clare P., Messina, Jane P., Mordecai, Erin A., Rabe, Ingrid B., Reiner, Robert C., Ryan, Sadie J., Salje, Henrik, Semenza, Jan C., Rojas, Diana P., Brady, Oliver J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10588093/
https://www.ncbi.nlm.nih.gov/pubmed/37864153
http://dx.doi.org/10.1186/s12879-023-08717-8
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author Lim, Ah-Young
Jafari, Yalda
Caldwell, Jamie M.
Clapham, Hannah E.
Gaythorpe, Katy A. M.
Hussain-Alkhateeb, Laith
Johansson, Michael A.
Kraemer, Moritz U. G.
Maude, Richard J.
McCormack, Clare P.
Messina, Jane P.
Mordecai, Erin A.
Rabe, Ingrid B.
Reiner, Robert C.
Ryan, Sadie J.
Salje, Henrik
Semenza, Jan C.
Rojas, Diana P.
Brady, Oliver J.
author_facet Lim, Ah-Young
Jafari, Yalda
Caldwell, Jamie M.
Clapham, Hannah E.
Gaythorpe, Katy A. M.
Hussain-Alkhateeb, Laith
Johansson, Michael A.
Kraemer, Moritz U. G.
Maude, Richard J.
McCormack, Clare P.
Messina, Jane P.
Mordecai, Erin A.
Rabe, Ingrid B.
Reiner, Robert C.
Ryan, Sadie J.
Salje, Henrik
Semenza, Jan C.
Rojas, Diana P.
Brady, Oliver J.
author_sort Lim, Ah-Young
collection PubMed
description BACKGROUND: Aedes (Stegomyia)-borne diseases are an expanding global threat, but gaps in surveillance make comprehensive and comparable risk assessments challenging. Geostatistical models combine data from multiple locations and use links with environmental and socioeconomic factors to make predictive risk maps. Here we systematically review past approaches to map risk for different Aedes-borne arboviruses from local to global scales, identifying differences and similarities in the data types, covariates, and modelling approaches used. METHODS: We searched on-line databases for predictive risk mapping studies for dengue, Zika, chikungunya, and yellow fever with no geographical or date restrictions. We included studies that needed to parameterise or fit their model to real-world epidemiological data and make predictions to new spatial locations of some measure of population-level risk of viral transmission (e.g. incidence, occurrence, suitability, etc.). RESULTS: We found a growing number of arbovirus risk mapping studies across all endemic regions and arboviral diseases, with a total of 176 papers published 2002–2022 with the largest increases shortly following major epidemics. Three dominant use cases emerged: (i) global maps to identify limits of transmission, estimate burden and assess impacts of future global change, (ii) regional models used to predict the spread of major epidemics between countries and (iii) national and sub-national models that use local datasets to better understand transmission dynamics to improve outbreak detection and response. Temperature and rainfall were the most popular choice of covariates (included in 50% and 40% of studies respectively) but variables such as human mobility are increasingly being included. Surprisingly, few studies (22%, 31/144) robustly tested combinations of covariates from different domains (e.g. climatic, sociodemographic, ecological, etc.) and only 49% of studies assessed predictive performance via out-of-sample validation procedures. CONCLUSIONS: Here we show that approaches to map risk for different arboviruses have diversified in response to changing use cases, epidemiology and data availability. We identify key differences in mapping approaches between different arboviral diseases, discuss future research needs and outline specific recommendations for future arbovirus mapping. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12879-023-08717-8.
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spelling pubmed-105880932023-10-21 A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk Lim, Ah-Young Jafari, Yalda Caldwell, Jamie M. Clapham, Hannah E. Gaythorpe, Katy A. M. Hussain-Alkhateeb, Laith Johansson, Michael A. Kraemer, Moritz U. G. Maude, Richard J. McCormack, Clare P. Messina, Jane P. Mordecai, Erin A. Rabe, Ingrid B. Reiner, Robert C. Ryan, Sadie J. Salje, Henrik Semenza, Jan C. Rojas, Diana P. Brady, Oliver J. BMC Infect Dis Research BACKGROUND: Aedes (Stegomyia)-borne diseases are an expanding global threat, but gaps in surveillance make comprehensive and comparable risk assessments challenging. Geostatistical models combine data from multiple locations and use links with environmental and socioeconomic factors to make predictive risk maps. Here we systematically review past approaches to map risk for different Aedes-borne arboviruses from local to global scales, identifying differences and similarities in the data types, covariates, and modelling approaches used. METHODS: We searched on-line databases for predictive risk mapping studies for dengue, Zika, chikungunya, and yellow fever with no geographical or date restrictions. We included studies that needed to parameterise or fit their model to real-world epidemiological data and make predictions to new spatial locations of some measure of population-level risk of viral transmission (e.g. incidence, occurrence, suitability, etc.). RESULTS: We found a growing number of arbovirus risk mapping studies across all endemic regions and arboviral diseases, with a total of 176 papers published 2002–2022 with the largest increases shortly following major epidemics. Three dominant use cases emerged: (i) global maps to identify limits of transmission, estimate burden and assess impacts of future global change, (ii) regional models used to predict the spread of major epidemics between countries and (iii) national and sub-national models that use local datasets to better understand transmission dynamics to improve outbreak detection and response. Temperature and rainfall were the most popular choice of covariates (included in 50% and 40% of studies respectively) but variables such as human mobility are increasingly being included. Surprisingly, few studies (22%, 31/144) robustly tested combinations of covariates from different domains (e.g. climatic, sociodemographic, ecological, etc.) and only 49% of studies assessed predictive performance via out-of-sample validation procedures. CONCLUSIONS: Here we show that approaches to map risk for different arboviruses have diversified in response to changing use cases, epidemiology and data availability. We identify key differences in mapping approaches between different arboviral diseases, discuss future research needs and outline specific recommendations for future arbovirus mapping. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12879-023-08717-8. BioMed Central 2023-10-20 /pmc/articles/PMC10588093/ /pubmed/37864153 http://dx.doi.org/10.1186/s12879-023-08717-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Lim, Ah-Young
Jafari, Yalda
Caldwell, Jamie M.
Clapham, Hannah E.
Gaythorpe, Katy A. M.
Hussain-Alkhateeb, Laith
Johansson, Michael A.
Kraemer, Moritz U. G.
Maude, Richard J.
McCormack, Clare P.
Messina, Jane P.
Mordecai, Erin A.
Rabe, Ingrid B.
Reiner, Robert C.
Ryan, Sadie J.
Salje, Henrik
Semenza, Jan C.
Rojas, Diana P.
Brady, Oliver J.
A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk
title A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk
title_full A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk
title_fullStr A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk
title_full_unstemmed A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk
title_short A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk
title_sort systematic review of the data, methods and environmental covariates used to map aedes-borne arbovirus transmission risk
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10588093/
https://www.ncbi.nlm.nih.gov/pubmed/37864153
http://dx.doi.org/10.1186/s12879-023-08717-8
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