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UTILE-Gen: Automated Image Analysis in Nanoscience Using Synthetic Dataset Generator and Deep Learning
[Image: see text] This work presents the development and implementation of a deep learning-based workflow for autonomous image analysis in nanoscience. A versatile, agnostic, and configurable tool was developed to generate instance-segmented imaging datasets of nanoparticles. The synthetic generator...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10588433/ https://www.ncbi.nlm.nih.gov/pubmed/37868222 http://dx.doi.org/10.1021/acsnanoscienceau.3c00020 |
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author | Colliard-Granero, André Jitsev, Jenia Eikerling, Michael H. Malek, Kourosh Eslamibidgoli, Mohammad J. |
author_facet | Colliard-Granero, André Jitsev, Jenia Eikerling, Michael H. Malek, Kourosh Eslamibidgoli, Mohammad J. |
author_sort | Colliard-Granero, André |
collection | PubMed |
description | [Image: see text] This work presents the development and implementation of a deep learning-based workflow for autonomous image analysis in nanoscience. A versatile, agnostic, and configurable tool was developed to generate instance-segmented imaging datasets of nanoparticles. The synthetic generator tool employs domain randomization to expand the image/mask pairs dataset for training supervised deep learning models. The approach eliminates tedious manual annotation and allows training of high-performance models for microscopy image analysis based on convolutional neural networks. We demonstrate how the expanded training set can significantly improve the performance of the classification and instance segmentation models for a variety of nanoparticle shapes, ranging from spherical-, cubic-, to rod-shaped nanoparticles. Finally, the trained models were deployed in a cloud-based analytics platform for the autonomous particle analysis of microscopy images. |
format | Online Article Text |
id | pubmed-10588433 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-105884332023-10-21 UTILE-Gen: Automated Image Analysis in Nanoscience Using Synthetic Dataset Generator and Deep Learning Colliard-Granero, André Jitsev, Jenia Eikerling, Michael H. Malek, Kourosh Eslamibidgoli, Mohammad J. ACS Nanosci Au [Image: see text] This work presents the development and implementation of a deep learning-based workflow for autonomous image analysis in nanoscience. A versatile, agnostic, and configurable tool was developed to generate instance-segmented imaging datasets of nanoparticles. The synthetic generator tool employs domain randomization to expand the image/mask pairs dataset for training supervised deep learning models. The approach eliminates tedious manual annotation and allows training of high-performance models for microscopy image analysis based on convolutional neural networks. We demonstrate how the expanded training set can significantly improve the performance of the classification and instance segmentation models for a variety of nanoparticle shapes, ranging from spherical-, cubic-, to rod-shaped nanoparticles. Finally, the trained models were deployed in a cloud-based analytics platform for the autonomous particle analysis of microscopy images. American Chemical Society 2023-08-02 /pmc/articles/PMC10588433/ /pubmed/37868222 http://dx.doi.org/10.1021/acsnanoscienceau.3c00020 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Colliard-Granero, André Jitsev, Jenia Eikerling, Michael H. Malek, Kourosh Eslamibidgoli, Mohammad J. UTILE-Gen: Automated Image Analysis in Nanoscience Using Synthetic Dataset Generator and Deep Learning |
title | UTILE-Gen:
Automated Image Analysis in Nanoscience
Using Synthetic Dataset Generator and Deep Learning |
title_full | UTILE-Gen:
Automated Image Analysis in Nanoscience
Using Synthetic Dataset Generator and Deep Learning |
title_fullStr | UTILE-Gen:
Automated Image Analysis in Nanoscience
Using Synthetic Dataset Generator and Deep Learning |
title_full_unstemmed | UTILE-Gen:
Automated Image Analysis in Nanoscience
Using Synthetic Dataset Generator and Deep Learning |
title_short | UTILE-Gen:
Automated Image Analysis in Nanoscience
Using Synthetic Dataset Generator and Deep Learning |
title_sort | utile-gen:
automated image analysis in nanoscience
using synthetic dataset generator and deep learning |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10588433/ https://www.ncbi.nlm.nih.gov/pubmed/37868222 http://dx.doi.org/10.1021/acsnanoscienceau.3c00020 |
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