Cargando…

Comparison between pystan and numpyro in Bayesian item response theory: evaluation of agreement of estimated latent parameters and sampling performance

PURPOSE: The purpose of this study is to compare two libraries dedicated to the Markov chain Monte Carlo method: pystan and numpyro. In the comparison, we mainly focused on the agreement of estimated latent parameters and the performance of sampling using the Markov chain Monte Carlo method in Bayes...

Descripción completa

Detalles Bibliográficos
Autores principales:	Nishio, Mizuho, Ota, Eiji, Matsuo, Hidetoshi, Matsunaga, Takaaki, Miyazaki, Aki, Murakami, Takamichi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2023
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10588711/ https://www.ncbi.nlm.nih.gov/pubmed/37869462 http://dx.doi.org/10.7717/peerj-cs.1620

Ejemplares similares

Bayesian multidimensional nominal response model for observer study of radiologists
por: Nishio, Mizuho, et al.
Publicado: (2022)

Computer-aided diagnosis of chest X-ray for COVID-19 diagnosis in external validation study by radiologists with and without deep learning system
por: Miyazaki, Aki, et al.
Publicado: (2023)

Automatic classification between COVID-19 pneumonia, non-COVID-19 pneumonia, and the healthy on chest X-ray image: combination of data augmentation methods
por: Nishio, Mizuho, et al.
Publicado: (2020)

Sparse bayesian learning for genomic selection in yeast
por: Ayat, Maryam, et al.
Publicado: (2022)

Distributed Bayesian networks reconstruction on the whole genome scale
por: Frolova, Alina, et al.
Publicado: (2018)

OBAMA: OBAMA for Bayesian amino-acid model averaging
por: Bouckaert, Remco R.
Publicado: (2020)

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics
por: Fourment, Mathieu, et al.
Publicado: (2019)

Bayesian logical neural networks for human-centered applications in medicine
por: Diaz Ochoa, Juan G., et al.
Publicado: (2023)

Characterization of tumor heterogeneity by latent haplotypes: a sequential Monte Carlo approach
por: Ogundijo, Oyetunji E., et al.
Publicado: (2018)

Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics
por: McGhee, Jordan J., et al.
Publicado: (2020)

NOBIAS: Analyzing Anomalous Diffusion in Single-Molecule Tracks With Nonparametric Bayesian Inference
por: Chen, Ziyuan, et al.
Publicado: (2021)

bakR: uncovering differential RNA synthesis and degradation kinetics transcriptome-wide with Bayesian hierarchical modeling
por: Vock, Isaac W., et al.
Publicado: (2023)

Bayesian networks and imaging-derived phenotypes highlight the role of fat deposition in COVID-19 hospitalisation risk
por: Waddell, T., et al.
Publicado: (2023)

An Efficient GUI-Based Clustering Software for Simulation and Bayesian Cluster Analysis of Single-Molecule Localization Microscopy Data
por: Kutz, Saskia, et al.
Publicado: (2021)

Unsupervised-learning-based method for chest MRI–CT transformation using structure constrained unsupervised generative attention networks
por: Matsuo, Hidetoshi, et al.
Publicado: (2022)

OC_Finder: Osteoclast Segmentation, Counting, and Classification Using Watershed and Deep Learning
por: Wang, Xiao, et al.
Publicado: (2022)

Integrated probability of coronary heart disease subject to the −308 tumor necrosis factor-alpha SNP: a Bayesian meta-analysis
por: Carvalho, C. Sofia
Publicado: (2015)

First‐line immune‐based combination therapies for advanced non‐small cell lung cancer: A Bayesian network meta‐analysis
por: Mao, Ziyang, et al.
Publicado: (2021)

Cytolytic activity score as a biomarker for antitumor immunity and clinical outcome in patients with gastric cancer
por: Hu, Qingjiang, et al.
Publicado: (2021)

Diagnostic accuracy of deep-learning with anomaly detection for a small amount of imbalanced data: discriminating malignant parotid tumors in MRI
por: Matsuo, Hidetoshi, et al.
Publicado: (2020)

Deep learning model for the automatic classification of COVID-19 pneumonia, non-COVID-19 pneumonia, and the healthy: a multi-center retrospective study
por: Nishio, Mizuho, et al.
Publicado: (2022)

Bayesian methods for measures of agreement
por: Broemeling, Lyle D
Publicado: (2009)

The use of Bayesian methodology in the development and validation of a tiered assessment approach towards prediction of rat acute oral toxicity
por: Firman, James W., et al.
Publicado: (2022)

Label Distribution Learning for Automatic Cancer Grading of Histopathological Images of Prostate Cancer
por: Nishio, Mizuho, et al.
Publicado: (2023)

Lung Cancer Segmentation With Transfer Learning: Usefulness of a Pretrained Model Constructed From an Artificial Dataset Generated Using a Generative Adversarial Network
por: Nishio, Mizuho, et al.
Publicado: (2021)

Bayesian Item Response Modeling: Theory and Applications
por: Fox, Jean-Paul
Publicado: (2010)

Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: environmental factors
por: Emmert-Streib, Frank
Publicado: (2013)

A new 12-gene diagnostic biomarker signature of melanoma revealed by integrated microarray analysis
por: Liu, Wanting, et al.
Publicado: (2013)

A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV helicase
por: Vlachakis, Dimitrios, et al.
Publicado: (2013)

Comparative selenoproteome analysis reveals a reduced utilization of selenium in parasitic platyhelminthes
por: Jiang, Liang, et al.
Publicado: (2013)

An integrated pipeline for next generation sequencing and annotation of the complete mitochondrial genome of the giant intestinal fluke, Fasciolopsis buski (Lankester, 1857) Looss, 1899
por: Biswal, Devendra Kumar, et al.
Publicado: (2013)

Characterization of RNA in exosomes secreted by human breast cancer cell lines using next-generation sequencing
por: Jenjaroenpun, Piroon, et al.
Publicado: (2013)

Highly conserved RNA pseudoknots at the gag-pol junction of HIV-1 suggest a novel mechanism of −1 ribosomal frameshifting
por: Huang, Xiaolan, et al.
Publicado: (2014)

Biblio-MetReS for user-friendly mining of genes and biological processes in scientific documents
por: Usie, Anabel, et al.
Publicado: (2014)

System wide analyses have underestimated protein abundances and the importance of transcription in mammals
por: Li, Jingyi Jessica, et al.
Publicado: (2014)

The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes
por: Sahl, Jason W., et al.
Publicado: (2014)

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms
por: Puritz, Jonathan B., et al.
Publicado: (2014)

BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU
por: Luo, Ruibang, et al.
Publicado: (2014)

Increasing the precision of orthology-based complex prediction through network alignment
por: Pache, Roland A., et al.
Publicado: (2014)

Ribosome-omics of the human ribosome
por: Gupta, Varun, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_tiok5c8nnu2kd24vce6timnb25