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Change-point models for identifying behavioral transitions in wild animals

Animal behavior can be difficult, time-consuming, and costly to observe in the field directly. Innovative modeling methods, such as hidden Markov models (HMMs), allow researchers to infer unobserved animal behaviors from movement data, and implementations often assume that transitions between states...

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Autores principales: Gundermann, Kathleen P., Diefenbach, D. R., Walter, W. D., Corondi, A. M., Banfield, J. E., Wallingford, B. D., Stainbrook, D. P., Rosenberry, C. S., Buderman, F. E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10589947/
https://www.ncbi.nlm.nih.gov/pubmed/37864238
http://dx.doi.org/10.1186/s40462-023-00430-0
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author Gundermann, Kathleen P.
Diefenbach, D. R.
Walter, W. D.
Corondi, A. M.
Banfield, J. E.
Wallingford, B. D.
Stainbrook, D. P.
Rosenberry, C. S.
Buderman, F. E.
author_facet Gundermann, Kathleen P.
Diefenbach, D. R.
Walter, W. D.
Corondi, A. M.
Banfield, J. E.
Wallingford, B. D.
Stainbrook, D. P.
Rosenberry, C. S.
Buderman, F. E.
author_sort Gundermann, Kathleen P.
collection PubMed
description Animal behavior can be difficult, time-consuming, and costly to observe in the field directly. Innovative modeling methods, such as hidden Markov models (HMMs), allow researchers to infer unobserved animal behaviors from movement data, and implementations often assume that transitions between states occur multiple times. However, some behavioral shifts of interest, such as parturition, migration initiation, and juvenile dispersal, may only occur once during an observation period, and HMMs may not be the best approach to identify these changes. We present two change-point models for identifying single transitions in movement behavior: a location-based change-point model and a movement metric-based change-point model. We first conducted a simulation study to determine the ability of these models to detect a behavioral transition given different amounts of data and the degree of behavioral shifts. We then applied our models to two ungulate species in central Pennsylvania that were fitted with global positioning system collars and vaginal implant transmitters to test hypotheses related to parturition behavior. We fit these models in a Bayesian framework and directly compared the ability of each model to describe the parturition behavior across species. Our simulation study demonstrated that successful change point estimation using either model was possible given at least 12 h of post-change observations and 15 min fix interval. However, our models received mixed support among deer and elk in Pennsylvania due to behavioral variation between species and among individuals. Our results demonstrate that when the behavior follows the dynamics proposed by the two models, researchers can identify the timing of a behavioral change. Although we refer to detecting parturition events, our results can be applied to any behavior that results in a single change in time. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40462-023-00430-0.
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spelling pubmed-105899472023-10-22 Change-point models for identifying behavioral transitions in wild animals Gundermann, Kathleen P. Diefenbach, D. R. Walter, W. D. Corondi, A. M. Banfield, J. E. Wallingford, B. D. Stainbrook, D. P. Rosenberry, C. S. Buderman, F. E. Mov Ecol Research Animal behavior can be difficult, time-consuming, and costly to observe in the field directly. Innovative modeling methods, such as hidden Markov models (HMMs), allow researchers to infer unobserved animal behaviors from movement data, and implementations often assume that transitions between states occur multiple times. However, some behavioral shifts of interest, such as parturition, migration initiation, and juvenile dispersal, may only occur once during an observation period, and HMMs may not be the best approach to identify these changes. We present two change-point models for identifying single transitions in movement behavior: a location-based change-point model and a movement metric-based change-point model. We first conducted a simulation study to determine the ability of these models to detect a behavioral transition given different amounts of data and the degree of behavioral shifts. We then applied our models to two ungulate species in central Pennsylvania that were fitted with global positioning system collars and vaginal implant transmitters to test hypotheses related to parturition behavior. We fit these models in a Bayesian framework and directly compared the ability of each model to describe the parturition behavior across species. Our simulation study demonstrated that successful change point estimation using either model was possible given at least 12 h of post-change observations and 15 min fix interval. However, our models received mixed support among deer and elk in Pennsylvania due to behavioral variation between species and among individuals. Our results demonstrate that when the behavior follows the dynamics proposed by the two models, researchers can identify the timing of a behavioral change. Although we refer to detecting parturition events, our results can be applied to any behavior that results in a single change in time. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40462-023-00430-0. BioMed Central 2023-10-20 /pmc/articles/PMC10589947/ /pubmed/37864238 http://dx.doi.org/10.1186/s40462-023-00430-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Gundermann, Kathleen P.
Diefenbach, D. R.
Walter, W. D.
Corondi, A. M.
Banfield, J. E.
Wallingford, B. D.
Stainbrook, D. P.
Rosenberry, C. S.
Buderman, F. E.
Change-point models for identifying behavioral transitions in wild animals
title Change-point models for identifying behavioral transitions in wild animals
title_full Change-point models for identifying behavioral transitions in wild animals
title_fullStr Change-point models for identifying behavioral transitions in wild animals
title_full_unstemmed Change-point models for identifying behavioral transitions in wild animals
title_short Change-point models for identifying behavioral transitions in wild animals
title_sort change-point models for identifying behavioral transitions in wild animals
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10589947/
https://www.ncbi.nlm.nih.gov/pubmed/37864238
http://dx.doi.org/10.1186/s40462-023-00430-0
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