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Art driven by visual representations of chemical space

Science and art have been connected for centuries. With the development of new computational methods, new scientific disciplines have emerged, such as computational chemistry, and related fields, such as cheminformatics. Chemoinformatics is grounded on the chemical space concept: a multi-descriptor...

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Autores principales: Gaytán-Hernández, Daniela, Chávez-Hernández, Ana L., López-López, Edgar, Miranda-Salas, Jazmín, Saldívar-González, Fernanda I., Medina-Franco, José L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10590523/
https://www.ncbi.nlm.nih.gov/pubmed/37865794
http://dx.doi.org/10.1186/s13321-023-00770-4
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author Gaytán-Hernández, Daniela
Chávez-Hernández, Ana L.
López-López, Edgar
Miranda-Salas, Jazmín
Saldívar-González, Fernanda I.
Medina-Franco, José L.
author_facet Gaytán-Hernández, Daniela
Chávez-Hernández, Ana L.
López-López, Edgar
Miranda-Salas, Jazmín
Saldívar-González, Fernanda I.
Medina-Franco, José L.
author_sort Gaytán-Hernández, Daniela
collection PubMed
description Science and art have been connected for centuries. With the development of new computational methods, new scientific disciplines have emerged, such as computational chemistry, and related fields, such as cheminformatics. Chemoinformatics is grounded on the chemical space concept: a multi-descriptor space in which chemical structures are described. In several practical applications, visual representations of the chemical space of compound datasets are low-dimensional plots helpful in identifying patterns. However, the authors propose that the plots can also be used as artistic expressions. This manuscript introduces an approach to merging art with chemoinformatics through visual and artistic representations of chemical space. As case studies, we portray the chemical space of food chemicals and other compounds to generate visually appealing graphs with twofold benefits: sharing chemical knowledge and developing pieces of art driven by chemoinformatics. The art driven by chemical space visualization will help increase the application of chemistry and art and contribute to general education and dissemination of chemoinformatics and chemistry through artistic expressions. All the code and data sets to reproduce the visual representation of the chemical space presented in the manuscript are freely available at https://github.com/DIFACQUIM/Art-Driven-by-Visual-Representations-of-Chemical-Space-. Scientific contribution: Chemical space as a concept to create digital art and as a tool to train and introduce students to cheminformatics. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13321-023-00770-4.
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spelling pubmed-105905232023-10-23 Art driven by visual representations of chemical space Gaytán-Hernández, Daniela Chávez-Hernández, Ana L. López-López, Edgar Miranda-Salas, Jazmín Saldívar-González, Fernanda I. Medina-Franco, José L. J Cheminform Educational Article Science and art have been connected for centuries. With the development of new computational methods, new scientific disciplines have emerged, such as computational chemistry, and related fields, such as cheminformatics. Chemoinformatics is grounded on the chemical space concept: a multi-descriptor space in which chemical structures are described. In several practical applications, visual representations of the chemical space of compound datasets are low-dimensional plots helpful in identifying patterns. However, the authors propose that the plots can also be used as artistic expressions. This manuscript introduces an approach to merging art with chemoinformatics through visual and artistic representations of chemical space. As case studies, we portray the chemical space of food chemicals and other compounds to generate visually appealing graphs with twofold benefits: sharing chemical knowledge and developing pieces of art driven by chemoinformatics. The art driven by chemical space visualization will help increase the application of chemistry and art and contribute to general education and dissemination of chemoinformatics and chemistry through artistic expressions. All the code and data sets to reproduce the visual representation of the chemical space presented in the manuscript are freely available at https://github.com/DIFACQUIM/Art-Driven-by-Visual-Representations-of-Chemical-Space-. Scientific contribution: Chemical space as a concept to create digital art and as a tool to train and introduce students to cheminformatics. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13321-023-00770-4. Springer International Publishing 2023-10-21 /pmc/articles/PMC10590523/ /pubmed/37865794 http://dx.doi.org/10.1186/s13321-023-00770-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Educational Article
Gaytán-Hernández, Daniela
Chávez-Hernández, Ana L.
López-López, Edgar
Miranda-Salas, Jazmín
Saldívar-González, Fernanda I.
Medina-Franco, José L.
Art driven by visual representations of chemical space
title Art driven by visual representations of chemical space
title_full Art driven by visual representations of chemical space
title_fullStr Art driven by visual representations of chemical space
title_full_unstemmed Art driven by visual representations of chemical space
title_short Art driven by visual representations of chemical space
title_sort art driven by visual representations of chemical space
topic Educational Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10590523/
https://www.ncbi.nlm.nih.gov/pubmed/37865794
http://dx.doi.org/10.1186/s13321-023-00770-4
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