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Genomic data of two chickpea populations sharing a potential Ascochyta blight resistance region

Chickpea (Cicer arietinum L.) is one of the most important crops worldwide and a valuable nutritional source. The availability of data from different genotypes and populations is important for the comprehension of the biology and trait control of chickpea. Tissue from young leaves was collected from...

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Autores principales: Carmona, Alejandro, Castro, Patricia, Perez-Rial, Adrian, Die, Jose V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10591118/
https://www.ncbi.nlm.nih.gov/pubmed/37876827
http://dx.doi.org/10.1016/j.dib.2023.109624
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author Carmona, Alejandro
Castro, Patricia
Perez-Rial, Adrian
Die, Jose V.
author_facet Carmona, Alejandro
Castro, Patricia
Perez-Rial, Adrian
Die, Jose V.
author_sort Carmona, Alejandro
collection PubMed
description Chickpea (Cicer arietinum L.) is one of the most important crops worldwide and a valuable nutritional source. The availability of data from different genotypes and populations is important for the comprehension of the biology and trait control of chickpea. Tissue from young leaves was collected from adult plants and sequenced using an Illumina HiSeq X platform, which provided sequencing data for a total of 169 individuals from two different populations. Furthermore, functional annotation was performed with BLAST2GO software in a candidate region for resistance to Ascochyta blight, a devastating disease that produces huge yield reductions if the growth conditions are optimal for the fungus. A total of 273 different genes in a region spanning ∼4.67 Mb in chromosome 4 were fully annotated. The raw DNA sequences and functional annotation data can be reused by the scientific community for the analysis of different agronomic traits of interest in chickpea.
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spelling pubmed-105911182023-10-24 Genomic data of two chickpea populations sharing a potential Ascochyta blight resistance region Carmona, Alejandro Castro, Patricia Perez-Rial, Adrian Die, Jose V. Data Brief Data Article Chickpea (Cicer arietinum L.) is one of the most important crops worldwide and a valuable nutritional source. The availability of data from different genotypes and populations is important for the comprehension of the biology and trait control of chickpea. Tissue from young leaves was collected from adult plants and sequenced using an Illumina HiSeq X platform, which provided sequencing data for a total of 169 individuals from two different populations. Furthermore, functional annotation was performed with BLAST2GO software in a candidate region for resistance to Ascochyta blight, a devastating disease that produces huge yield reductions if the growth conditions are optimal for the fungus. A total of 273 different genes in a region spanning ∼4.67 Mb in chromosome 4 were fully annotated. The raw DNA sequences and functional annotation data can be reused by the scientific community for the analysis of different agronomic traits of interest in chickpea. Elsevier 2023-09-26 /pmc/articles/PMC10591118/ /pubmed/37876827 http://dx.doi.org/10.1016/j.dib.2023.109624 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Carmona, Alejandro
Castro, Patricia
Perez-Rial, Adrian
Die, Jose V.
Genomic data of two chickpea populations sharing a potential Ascochyta blight resistance region
title Genomic data of two chickpea populations sharing a potential Ascochyta blight resistance region
title_full Genomic data of two chickpea populations sharing a potential Ascochyta blight resistance region
title_fullStr Genomic data of two chickpea populations sharing a potential Ascochyta blight resistance region
title_full_unstemmed Genomic data of two chickpea populations sharing a potential Ascochyta blight resistance region
title_short Genomic data of two chickpea populations sharing a potential Ascochyta blight resistance region
title_sort genomic data of two chickpea populations sharing a potential ascochyta blight resistance region
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10591118/
https://www.ncbi.nlm.nih.gov/pubmed/37876827
http://dx.doi.org/10.1016/j.dib.2023.109624
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