Cargando…

Developmental validation of a novel multiple genotyping assay with 24 Canine STR loci

Canine individual identification and parentage testing are essential in various fields, including forensics and breeding programs. This study aimed to develop and validate the Canine 25 A kit, a multiplex polymerase chain reaction (PCR) system designed to address these critical requirements. This no...

Descripción completa

Detalles Bibliográficos
Autores principales: Du, Weian, Liu, Xueyuan, Huang, Litao, Zheng, Yangyang, Wu, Weibin, Huang, Qian, Li, Tao, Wei, Rongxing, Yang, Qianyong, Deng, Shiying, Liao, Jin, Liu, Chao, Chen, Ling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10591528/
https://www.ncbi.nlm.nih.gov/pubmed/37746714
http://dx.doi.org/10.1080/01652176.2023.2262521
_version_ 1785124239711404032
author Du, Weian
Liu, Xueyuan
Huang, Litao
Zheng, Yangyang
Wu, Weibin
Huang, Qian
Li, Tao
Wei, Rongxing
Yang, Qianyong
Deng, Shiying
Liao, Jin
Liu, Chao
Chen, Ling
author_facet Du, Weian
Liu, Xueyuan
Huang, Litao
Zheng, Yangyang
Wu, Weibin
Huang, Qian
Li, Tao
Wei, Rongxing
Yang, Qianyong
Deng, Shiying
Liao, Jin
Liu, Chao
Chen, Ling
author_sort Du, Weian
collection PubMed
description Canine individual identification and parentage testing are essential in various fields, including forensics and breeding programs. This study aimed to develop and validate the Canine 25 A kit, a multiplex polymerase chain reaction (PCR) system designed to address these critical requirements. This novel system enables the simultaneous amplification of 24 canine autosomal short tandem repeat (STR) loci and one sex-determining marker. Validation of the Canine 25 A kit was conducted following the Scientific Working Group on DNA Analysis Methods (SWGDAM) guidelines, demonstrating significant sensitivity, high inhibitor tolerance, canine specificity within a mixture, species specificity, and precision in genotype determination. The Canine 25 A kit was crucial in resolving several forensic cases, such as casework samples from a dog attack incident and parentage determination. Its effectiveness in genotyping these samples highlights its significance in forensic applications. Population genetic parameter analysis revealed a high discriminatory power, as indicated by the calculated combined discrimination power (CDP) values for each breed exceeding 0.999 999 999 999, while the combined power of exclusion (CPE) surpassed 0.9999. Overall, the Canine 25 A kit offers a precise and dependable tool for canine individual identification and parentage determination.
format Online
Article
Text
id pubmed-10591528
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-105915282023-10-24 Developmental validation of a novel multiple genotyping assay with 24 Canine STR loci Du, Weian Liu, Xueyuan Huang, Litao Zheng, Yangyang Wu, Weibin Huang, Qian Li, Tao Wei, Rongxing Yang, Qianyong Deng, Shiying Liao, Jin Liu, Chao Chen, Ling Vet Q Research Article Canine individual identification and parentage testing are essential in various fields, including forensics and breeding programs. This study aimed to develop and validate the Canine 25 A kit, a multiplex polymerase chain reaction (PCR) system designed to address these critical requirements. This novel system enables the simultaneous amplification of 24 canine autosomal short tandem repeat (STR) loci and one sex-determining marker. Validation of the Canine 25 A kit was conducted following the Scientific Working Group on DNA Analysis Methods (SWGDAM) guidelines, demonstrating significant sensitivity, high inhibitor tolerance, canine specificity within a mixture, species specificity, and precision in genotype determination. The Canine 25 A kit was crucial in resolving several forensic cases, such as casework samples from a dog attack incident and parentage determination. Its effectiveness in genotyping these samples highlights its significance in forensic applications. Population genetic parameter analysis revealed a high discriminatory power, as indicated by the calculated combined discrimination power (CDP) values for each breed exceeding 0.999 999 999 999, while the combined power of exclusion (CPE) surpassed 0.9999. Overall, the Canine 25 A kit offers a precise and dependable tool for canine individual identification and parentage determination. Taylor & Francis 2023-10-20 /pmc/articles/PMC10591528/ /pubmed/37746714 http://dx.doi.org/10.1080/01652176.2023.2262521 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Research Article
Du, Weian
Liu, Xueyuan
Huang, Litao
Zheng, Yangyang
Wu, Weibin
Huang, Qian
Li, Tao
Wei, Rongxing
Yang, Qianyong
Deng, Shiying
Liao, Jin
Liu, Chao
Chen, Ling
Developmental validation of a novel multiple genotyping assay with 24 Canine STR loci
title Developmental validation of a novel multiple genotyping assay with 24 Canine STR loci
title_full Developmental validation of a novel multiple genotyping assay with 24 Canine STR loci
title_fullStr Developmental validation of a novel multiple genotyping assay with 24 Canine STR loci
title_full_unstemmed Developmental validation of a novel multiple genotyping assay with 24 Canine STR loci
title_short Developmental validation of a novel multiple genotyping assay with 24 Canine STR loci
title_sort developmental validation of a novel multiple genotyping assay with 24 canine str loci
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10591528/
https://www.ncbi.nlm.nih.gov/pubmed/37746714
http://dx.doi.org/10.1080/01652176.2023.2262521
work_keys_str_mv AT duweian developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT liuxueyuan developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT huanglitao developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT zhengyangyang developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT wuweibin developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT huangqian developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT litao developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT weirongxing developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT yangqianyong developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT dengshiying developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT liaojin developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT liuchao developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci
AT chenling developmentalvalidationofanovelmultiplegenotypingassaywith24caninestrloci