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SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals
Balance and movement are impaired in many neurological disorders. Recent advances in behavioral monitoring provide unprecedented access to posture and locomotor kinematics but without the throughput and scalability necessary to screen candidate genes/potential therapeutics. Here, we present a scalab...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10592459/ https://www.ncbi.nlm.nih.gov/pubmed/37267107 http://dx.doi.org/10.1016/j.celrep.2023.112573 |
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author | Zhu, Yunlu Auer, Franziska Gelnaw, Hannah Davis, Samantha N. Hamling, Kyla R. May, Christina E. Ahamed, Hassan Ringstad, Niels Nagel, Katherine I. Schoppik, David |
author_facet | Zhu, Yunlu Auer, Franziska Gelnaw, Hannah Davis, Samantha N. Hamling, Kyla R. May, Christina E. Ahamed, Hassan Ringstad, Niels Nagel, Katherine I. Schoppik, David |
author_sort | Zhu, Yunlu |
collection | PubMed |
description | Balance and movement are impaired in many neurological disorders. Recent advances in behavioral monitoring provide unprecedented access to posture and locomotor kinematics but without the throughput and scalability necessary to screen candidate genes/potential therapeutics. Here, we present a scalable apparatus to measure posture and locomotion (SAMPL). SAMPL includes extensible hardware and open-source software with real-time processing and can acquire data from D. melanogaster, C. elegans, and D. rerio as they move vertically. Using SAMPL, we define how zebrafish balance as they navigate vertically and discover small but systematic variations among kinematic parameters between genetic backgrounds. We demonstrate SAMPL’s ability to resolve differences in posture and navigation as a function of effect size and data gathered, providing key data for screens. SAMPL is therefore both a tool to model balance and locomotor disorders and an exemplar of how to scale apparatus to support screens. |
format | Online Article Text |
id | pubmed-10592459 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
record_format | MEDLINE/PubMed |
spelling | pubmed-105924592023-10-23 SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals Zhu, Yunlu Auer, Franziska Gelnaw, Hannah Davis, Samantha N. Hamling, Kyla R. May, Christina E. Ahamed, Hassan Ringstad, Niels Nagel, Katherine I. Schoppik, David Cell Rep Article Balance and movement are impaired in many neurological disorders. Recent advances in behavioral monitoring provide unprecedented access to posture and locomotor kinematics but without the throughput and scalability necessary to screen candidate genes/potential therapeutics. Here, we present a scalable apparatus to measure posture and locomotion (SAMPL). SAMPL includes extensible hardware and open-source software with real-time processing and can acquire data from D. melanogaster, C. elegans, and D. rerio as they move vertically. Using SAMPL, we define how zebrafish balance as they navigate vertically and discover small but systematic variations among kinematic parameters between genetic backgrounds. We demonstrate SAMPL’s ability to resolve differences in posture and navigation as a function of effect size and data gathered, providing key data for screens. SAMPL is therefore both a tool to model balance and locomotor disorders and an exemplar of how to scale apparatus to support screens. 2023-06-27 2023-06-01 /pmc/articles/PMC10592459/ /pubmed/37267107 http://dx.doi.org/10.1016/j.celrep.2023.112573 Text en https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ). |
spellingShingle | Article Zhu, Yunlu Auer, Franziska Gelnaw, Hannah Davis, Samantha N. Hamling, Kyla R. May, Christina E. Ahamed, Hassan Ringstad, Niels Nagel, Katherine I. Schoppik, David SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals |
title | SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals |
title_full | SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals |
title_fullStr | SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals |
title_full_unstemmed | SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals |
title_short | SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals |
title_sort | sampl is a high-throughput solution to study unconstrained vertical behavior in small animals |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10592459/ https://www.ncbi.nlm.nih.gov/pubmed/37267107 http://dx.doi.org/10.1016/j.celrep.2023.112573 |
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