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SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals

Balance and movement are impaired in many neurological disorders. Recent advances in behavioral monitoring provide unprecedented access to posture and locomotor kinematics but without the throughput and scalability necessary to screen candidate genes/potential therapeutics. Here, we present a scalab...

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Autores principales: Zhu, Yunlu, Auer, Franziska, Gelnaw, Hannah, Davis, Samantha N., Hamling, Kyla R., May, Christina E., Ahamed, Hassan, Ringstad, Niels, Nagel, Katherine I., Schoppik, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10592459/
https://www.ncbi.nlm.nih.gov/pubmed/37267107
http://dx.doi.org/10.1016/j.celrep.2023.112573
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author Zhu, Yunlu
Auer, Franziska
Gelnaw, Hannah
Davis, Samantha N.
Hamling, Kyla R.
May, Christina E.
Ahamed, Hassan
Ringstad, Niels
Nagel, Katherine I.
Schoppik, David
author_facet Zhu, Yunlu
Auer, Franziska
Gelnaw, Hannah
Davis, Samantha N.
Hamling, Kyla R.
May, Christina E.
Ahamed, Hassan
Ringstad, Niels
Nagel, Katherine I.
Schoppik, David
author_sort Zhu, Yunlu
collection PubMed
description Balance and movement are impaired in many neurological disorders. Recent advances in behavioral monitoring provide unprecedented access to posture and locomotor kinematics but without the throughput and scalability necessary to screen candidate genes/potential therapeutics. Here, we present a scalable apparatus to measure posture and locomotion (SAMPL). SAMPL includes extensible hardware and open-source software with real-time processing and can acquire data from D. melanogaster, C. elegans, and D. rerio as they move vertically. Using SAMPL, we define how zebrafish balance as they navigate vertically and discover small but systematic variations among kinematic parameters between genetic backgrounds. We demonstrate SAMPL’s ability to resolve differences in posture and navigation as a function of effect size and data gathered, providing key data for screens. SAMPL is therefore both a tool to model balance and locomotor disorders and an exemplar of how to scale apparatus to support screens.
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spelling pubmed-105924592023-10-23 SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals Zhu, Yunlu Auer, Franziska Gelnaw, Hannah Davis, Samantha N. Hamling, Kyla R. May, Christina E. Ahamed, Hassan Ringstad, Niels Nagel, Katherine I. Schoppik, David Cell Rep Article Balance and movement are impaired in many neurological disorders. Recent advances in behavioral monitoring provide unprecedented access to posture and locomotor kinematics but without the throughput and scalability necessary to screen candidate genes/potential therapeutics. Here, we present a scalable apparatus to measure posture and locomotion (SAMPL). SAMPL includes extensible hardware and open-source software with real-time processing and can acquire data from D. melanogaster, C. elegans, and D. rerio as they move vertically. Using SAMPL, we define how zebrafish balance as they navigate vertically and discover small but systematic variations among kinematic parameters between genetic backgrounds. We demonstrate SAMPL’s ability to resolve differences in posture and navigation as a function of effect size and data gathered, providing key data for screens. SAMPL is therefore both a tool to model balance and locomotor disorders and an exemplar of how to scale apparatus to support screens. 2023-06-27 2023-06-01 /pmc/articles/PMC10592459/ /pubmed/37267107 http://dx.doi.org/10.1016/j.celrep.2023.112573 Text en https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Zhu, Yunlu
Auer, Franziska
Gelnaw, Hannah
Davis, Samantha N.
Hamling, Kyla R.
May, Christina E.
Ahamed, Hassan
Ringstad, Niels
Nagel, Katherine I.
Schoppik, David
SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals
title SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals
title_full SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals
title_fullStr SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals
title_full_unstemmed SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals
title_short SAMPL is a high-throughput solution to study unconstrained vertical behavior in small animals
title_sort sampl is a high-throughput solution to study unconstrained vertical behavior in small animals
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10592459/
https://www.ncbi.nlm.nih.gov/pubmed/37267107
http://dx.doi.org/10.1016/j.celrep.2023.112573
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